Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches
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Title
Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches
Authors
Keywords
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Journal
Microbiome
Volume 6, Issue 1, Pages -
Publisher
Springer Nature America, Inc
Online
2018-10-10
DOI
10.1186/s40168-018-0562-9
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Note: Only part of the references are listed.- Culture-Facilitated Comparative Genomics of the Facultative Symbiont Hamiltonella defensa
- (2018) Germain Chevignon et al. Genome Biology and Evolution
- Evolutionary loss and replacement of Buchnera, the obligate endosymbiont of aphids
- (2018) Rebecca A. Chong et al. ISME Journal
- Genomic Insight into Symbiosis-Induced Insect Color Change by a Facultative Bacterial Endosymbiont, “ Candidatus Rickettsiella viridis”
- (2018) Naruo Nikoh et al. mBio
- Happens in the best of subfamilies: establishment and repeated replacements of co-obligate secondary endosymbionts within Lachninae aphids
- (2017) Alejandro Manzano-Marín et al. ENVIRONMENTAL MICROBIOLOGY
- Microbial strain-level population structure and genetic diversity from metagenomes
- (2017) Duy Tin Truong et al. GENOME RESEARCH
- Culture of an aphid heritable symbiont demonstrates its direct role in defence against parasitoids
- (2017) Jayce W. Brandt et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Diversity in symbiont consortia in the pea aphid complex is associated with large phenotypic variation in the insect host
- (2016) Mélanie Leclair et al. EVOLUTIONARY ECOLOGY
- Centrifuge: rapid and sensitive classification of metagenomic sequences
- (2016) Daehwan Kim et al. GENOME RESEARCH
- Buchnera has changed flatmate but the repeated replacement of co-obligate symbionts is not associated with the ecological expansions of their aphid hosts
- (2016) A. S. Meseguer et al. MOLECULAR ECOLOGY
- How multi-partner endosymbioses function
- (2016) Angela E. Douglas NATURE REVIEWS MICROBIOLOGY
- Holes in the Hologenome: Why Host-Microbe Symbioses Are Not Holobionts
- (2016) Angela E. Douglas et al. mBio
- dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
- (2015) Tal Galili BIOINFORMATICS
- Insect life history and the evolution of bacterial mutualism
- (2015) Lee M. Henry et al. ECOLOGY LETTERS
- Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning
- (2015) Brian Cleary et al. NATURE BIOTECHNOLOGY
- Experimental replacement of an obligate insect symbiont
- (2015) Nancy A. Moran et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes
- (2015) Seth R. Bordenstein et al. PLOS BIOLOGY
- Microbiomes: unifying animal and plant systems through the lens of community ecology theory
- (2015) Natalie Christian et al. Frontiers in Microbiology
- The Road to Metagenomics: From Microbiology to DNA Sequencing Technologies and Bioinformatics
- (2015) Alejandra Escobar-Zepeda et al. Frontiers in Genetics
- Bacterial Communities Associated with Host-Adapted Populations of Pea Aphids Revealed by Deep Sequencing of 16S Ribosomal DNA
- (2015) Jean-Pierre Gauthier et al. PLoS One
- MindTheGap: integrated detection and assembly of short and long insertions
- (2014) G. Rizk et al. BIOINFORMATICS
- Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance
- (2014) Tae-Hyuk Ahn et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads
- (2014) A Gouin et al. HEREDITY
- Widespread infection and diverse infection patterns ofWolbachiain Chinese aphids
- (2014) Zhe Wang et al. Insect Science
- Binning metagenomic contigs by coverage and composition
- (2014) Johannes Alneberg et al. NATURE METHODS
- GroopM: an automated tool for the recovery of population genomes from related metagenomes
- (2014) Michael Imelfort et al. PeerJ
- Horizontally Transmitted Symbionts and Host Colonization of Ecological Niches
- (2013) Lee M. Henry et al. CURRENT BIOLOGY
- Pathoscope: Species identification and strain attribution with unassembled sequencing data
- (2013) O. E. Francis et al. GENOME RESEARCH
- Uncovering symbiont-driven genetic diversity across North American pea aphids
- (2013) Jacob A. Russell et al. MOLECULAR ECOLOGY
- The bacterial communities in plant phloem-sap-feeding insects
- (2013) Xiangfeng Jing et al. MOLECULAR ECOLOGY
- Multi-Infections of Feminizing Wolbachia Strains in Natural Populations of the Terrestrial Isopod Armadillidium Vulgare
- (2013) Victorien Valette et al. PLoS One
- Animals in a bacterial world, a new imperative for the life sciences
- (2013) Margaret McFall-Ngai et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Do diet and taxonomy influence insect gut bacterial communities?
- (2012) D. R. Colman et al. MOLECULAR ECOLOGY
- Genome scans reveal candidate regions involved in the adaptation to host plant in the pea aphid complex
- (2012) J. Jaquiéry et al. MOLECULAR ECOLOGY
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- Massive Genomic Decay in Serratia symbiotica, a Recently Evolved Symbiont of Aphids
- (2011) Gaelen R. Burke et al. Genome Biology and Evolution
- Genomic basis of endosymbiont-conferred protection against an insect parasitoid
- (2011) A. K. Hansen et al. GENOME RESEARCH
- Jane: a new tool for the cophylogeny reconstruction problem
- (2010) Chris Conow et al. Algorithms for Molecular Biology
- Evolutionary history of aphid-plant associations and their role in aphid diversification
- (2010) Jean Peccoud et al. COMPTES RENDUS BIOLOGIES
- Genome Sequence of the Pea Aphid Acyrthosiphon pisum
- (2010) PLOS BIOLOGY
- Facultative Symbionts in Aphids and the Horizontal Transfer of Ecologically Important Traits
- (2009) Kerry M. Oliver et al. Annual Review of Entomology
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola
- (2009) Gavin H Thomas et al. BMC Systems Biology
- The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans
- (2009) L. Klasson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A continuum of genetic divergence from sympatric host races to species in the pea aphid complex
- (2009) J. Peccoud et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors
- (2009) P. H. Degnan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Post-Pleistocene radiation of the pea aphid complex revealed by rapidly evolving endosymbionts
- (2009) J. Peccoud et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Dynamics and Time Scale of Ongoing Genomic Erosion in Symbiotic Bacteria
- (2009) N. A. Moran et al. SCIENCE
- Genomics and Evolution of Heritable Bacterial Symbionts
- (2008) Nancy A. Moran et al. Annual Review of Genetics
- Diverse Phage-Encoded Toxins in a Protective Insect Endosymbiont
- (2008) P. H. Degnan et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Efficient computation of the phylogenetic likelihood function on multi-gene alignments and multi-core architectures
- (2008) A. Stamatakis et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Fine-scale cospeciation between Brachycaudus and Buchnera aphidicola: bacterial genome helps define species and evolutionary relationships in aphids
- (2008) E. Jousselin et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
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