Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes
Authors
Keywords
-
Journal
eLife
Volume 9, Issue -, Pages -
Publisher
eLife Sciences Publications, Ltd
Online
2020-02-18
DOI
10.7554/elife.53500
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The evolutionary traceability of a protein
- (2019) Arpit Jain et al. Genome Biology and Evolution
- Molecular mechanism and history of non-sense to sense evolution of antifreeze glycoprotein gene in northern gadids
- (2019) Xuan Zhuang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- De Novo, Divergence, and Mixed Origin Contribute to the Emergence of Orphan Genes in Pristionchus Nematodes
- (2019) Neel Prabh et al. G3-Genes Genomes Genetics
- De novo gene birth
- (2019) Stephen Branden Van Oss et al. PLoS Genetics
- fagin: synteny-based phylostratigraphy and finer classification of young genes
- (2019) Zebulun Arendsee et al. BMC BIOINFORMATICS
- Further Simulations and Analyses Demonstrate Open Problems of Phylostratigraphy
- (2017) Bryan A. Moyers et al. Genome Biology and Evolution
- De Novo Gene Evolution of Antifreeze Glycoproteins in Codfishes Revealed by Whole Genome Sequence Data
- (2017) Helle Tessand Baalsrud et al. MOLECULAR BIOLOGY AND EVOLUTION
- A Molecular Portrait of De Novo Genes in Yeasts
- (2017) Nikolaos Vakirlis et al. MOLECULAR BIOLOGY AND EVOLUTION
- No evidence for phylostratigraphic bias impacting inferences on patterns of gene emergence and evolution
- (2017) Tomislav Domazet-Lošo et al. MOLECULAR BIOLOGY AND EVOLUTION
- Young genes are highly disordered as predicted by the preadaptation hypothesis of de novo gene birth
- (2017) Benjamin A. Wilson et al. Nature Ecology & Evolution
- Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus
- (2016) Nikolaos Vakirlis et al. GENOME RESEARCH
- Evaluating Phylostratigraphic Evidence for Widespread De Novo Gene Birth in Genome Evolution
- (2016) Bryan A. Moyers et al. MOLECULAR BIOLOGY AND EVOLUTION
- Open questions in the study of de novo genes: what, how and why
- (2016) Aoife McLysaght et al. NATURE REVIEWS GENETICS
- RaptorX-Property: a web server for protein structure property prediction
- (2016) Sheng Wang et al. NUCLEIC ACIDS RESEARCH
- flyDIVaS : A Comparative Genomics Resource for Drosophila Divergence and Selection
- (2016) Craig E. Stanley et al. G3-Genes Genomes Genetics
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- New genes from non-coding sequence: the role of de novo protein-coding genes in eukaryotic evolutionary innovation
- (2015) Aoife McLysaght et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Genes from scratch – the evolutionary fate of de novo genes
- (2015) Christian Schlötterer TRENDS IN GENETICS
- Origins of De Novo Genes in Human and Chimpanzee
- (2015) Jorge Ruiz-Orera et al. PLoS Genetics
- Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
- (2014) B. A. Moyers et al. MOLECULAR BIOLOGY AND EVOLUTION
- Origin and Spread of de Novo Genes in Drosophila melanogaster Populations
- (2014) L. Zhao et al. SCIENCE
- The life cycle of Drosophila orphan genes
- (2014) Nicola Palmieri et al. eLife
- New Gene Evolution: Little Did We Know
- (2013) Manyuan Long et al. Annual Review of Genetics
- Mechanisms and Dynamics of Orphan Gene Emergence in Insect Genomes
- (2013) Lothar Wissler et al. Genome Biology and Evolution
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Functional and evolutionary implications of gene orthology
- (2013) Toni Gabaldón et al. NATURE REVIEWS GENETICS
- Proto-genes and de novo gene birth
- (2012) Anne-Ruxandra Carvunis et al. NATURE
- LUCApedia: a database for the study of ancient life
- (2012) Aaron David Goldman et al. NUCLEIC ACIDS RESEARCH
- Mne1 Is a Novel Component of the Mitochondrial Splicing Apparatus Responsible for Processing of aCOX1Group I Intron in Yeast
- (2011) Talina Watts et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The evolutionary origin of orphan genes
- (2011) Diethard Tautz et al. NATURE REVIEWS GENETICS
- Saccharomyces Genome Database: the genomics resource of budding yeast
- (2011) J. M. Cherry et al. NUCLEIC ACIDS RESEARCH
- Horizontal gene transfer between bacteria and animals
- (2011) Julie C. Dunning Hotopp TRENDS IN GENETICS
- The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus
- (2011) Devin R. Scannell et al. G3-Genes Genomes Genetics
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- A new repeat-masking method enables specific detection of homologous sequences
- (2010) Martin C. Frith NUCLEIC ACIDS RESEARCH
- Darwinian alchemy: Human genes from noncoding DNA
- (2009) A. Siepel GENOME RESEARCH
- Infantile cardiomyopathy caused by a mutation in the overlapping region of mitochondrial ATPase 6 and 8 genes
- (2009) S M Ware et al. JOURNAL OF MEDICAL GENETICS
- Identifying and Quantifying Orphan Protein Sequences in Fungi
- (2009) Diana Ekman et al. JOURNAL OF MOLECULAR BIOLOGY
- The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages
- (2009) Y. I. Wolf et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- More than just orphans: are taxonomically-restricted genes important in evolution?
- (2009) Konstantin Khalturin et al. TRENDS IN GENETICS
- De Novo Origination of a New Protein-Coding Gene in Saccharomyces cerevisiae
- (2008) J. Cai et al. GENETICS
- On the origin of new genes in Drosophila
- (2008) Q. Zhou et al. GENOME RESEARCH
- Revisiting the Saccharomyces cerevisiae predicted ORFeome
- (2008) Q.-R. Li et al. GENOME RESEARCH
- Origin of Primate Orphan Genes: A Comparative Genomics Approach
- (2008) M. Toll-Riera et al. MOLECULAR BIOLOGY AND EVOLUTION
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started