Deep learning models predict regulatory variants in pancreatic islets and refine type 2 diabetes association signals
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Deep learning models predict regulatory variants in pancreatic islets and refine type 2 diabetes association signals
Authors
Keywords
-
Journal
eLife
Volume 9, Issue -, Pages -
Publisher
eLife Sciences Publications, Ltd
Online
2020-01-27
DOI
10.7554/elife.51503
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Biological relevance of computationally predicted pathogenicity of noncoding variants
- (2019) Li Liu et al. Nature Communications
- Patterns of differential gene expression in a cellular model of human islet development, and relationship to type 2 diabetes predisposition
- (2018) Marta Perez-Alcantara et al. DIABETOLOGIA
- Sequential regulatory activity prediction across chromosomes with convolutional neural networks
- (2018) David R. Kelley et al. GENOME RESEARCH
- Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk
- (2018) Jian Zhou et al. NATURE GENETICS
- Integration of human pancreatic islet genomic data refines regulatory mechanisms at Type 2 Diabetes susceptibility loci
- (2018) Matthias Thurner et al. eLife
- Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps
- (2018) Anubha Mahajan et al. NATURE GENETICS
- High-resolution genome-wide functional dissection of transcriptional regulatory regions and nucleotides in human
- (2018) Xinchen Wang et al. Nature Communications
- Genetic effects on gene expression across human tissues
- (2017) François Aguet et al. NATURE
- FGWAS: Functional genome wide association analysis
- (2017) Chao Huang et al. NEUROIMAGE
- Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits
- (2016) Jacob C. Ulirsch et al. CELL
- Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay
- (2016) Ryan Tewhey et al. CELL
- Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks
- (2016) David R. Kelley et al. GENOME RESEARCH
- Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases
- (2016) Daniel Marbach et al. NATURE METHODS
- Integration of ATAC-seq and RNA-seq identifies human alpha cell and beta cell signature genes
- (2016) Amanda M. Ackermann et al. Molecular Metabolism
- PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R
- (2015) Jan Grau et al. BIOINFORMATICS
- Human pancreas development
- (2015) R. E. Jennings et al. DEVELOPMENT
- Role of transcription factors in the transdifferentiation of pancreatic islet cells
- (2015) T. van der Meulen et al. JOURNAL OF MOLECULAR ENDOCRINOLOGY
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci
- (2015) Kyle J Gaulton et al. NATURE GENETICS
- Predicting effects of noncoding variants with deep learning–based sequence model
- (2015) Jian Zhou et al. NATURE METHODS
- Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
- (2014) Matthew T. Weirauch et al. CELL
- Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants
- (2014) Lorenzo Pasquali et al. NATURE GENETICS
- Impact of Type 2 Diabetes Susceptibility Variants on Quantitative Glycemic Traits Reveals Mechanistic Heterogeneity
- (2013) Antigone S. Dimas et al. DIABETES
- Epigenomic plasticity enables human pancreatic α to β cell reprogramming
- (2013) Nuria C. Bramswig et al. JOURNAL OF CLINICAL INVESTIGATION
- Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants
- (2013) S. C. J. Parker et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ENCODE: The human encyclopaedia
- (2012) Brendan Maher NATURE
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- A genetically engineered human pancreatic β cell line exhibiting glucose-inducible insulin secretion
- (2011) Philippe Ravassard et al. JOURNAL OF CLINICAL INVESTIGATION
- Pancreatic β Cells Require NeuroD to Achieve and Maintain Functional Maturity
- (2010) Chunyan Gu et al. Cell Metabolism
- Global Epigenomic Analysis of Primary Human Pancreatic Islets Provides Insights into Type 2 Diabetes Susceptibility Loci
- (2010) Michael L. Stitzel et al. Cell Metabolism
- Genome-wide analysis of histone modifications in human pancreatic islets
- (2010) R. Bhandare et al. GENOME RESEARCH
- The NIH Roadmap Epigenomics Mapping Consortium
- (2010) Bradley E Bernstein et al. NATURE BIOTECHNOLOGY
- A map of open chromatin in human pancreatic islets
- (2010) Kyle J Gaulton et al. NATURE GENETICS
- Charting histone modifications and the functional organization of mammalian genomes
- (2010) Vicky W. Zhou et al. NATURE REVIEWS GENETICS
- GAGE: generally applicable gene set enrichment for pathway analysis
- (2009) Weijun Luo et al. BMC BIOINFORMATICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search