Transcriptomic regulation of seasonal coat color change in hares

Introgression drives repeated evolution of winter coat color polymorphism in hares

(2019) Iwona Giska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Function and underlying mechanisms of seasonal colour moulting in mammals and birds: what keeps them changing in a warming world?

(2018) Marketa Zimova et al.   BIOLOGICAL REVIEWS

Winter color polymorphisms identify global hot spots for evolutionary rescue from climate change

(2018) L. Scott Mills et al.   SCIENCE

Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares

(2018) Matthew R. Jones et al.   SCIENCE

Climate change is affecting mortality of weasels due to camouflage mismatch

(2018) Kamal Atmeh et al.   Scientific Reports

pcr: an R package for quality assessment, analysis and testing of qPCR data

(2018) Mahmoud Ahmed et al.   PeerJ

The transcriptional landscape of seasonal coat colour moult in the snowshoe hare

(2017) Mafalda S. Ferreira et al.   MOLECULAR ECOLOGY

High fitness costs of climate change-induced camouflage mismatch

(2016) Marketa Zimova et al.   ECOLOGY LETTERS

TransRate: reference-free quality assessment of de novo transcriptome assemblies

(2016) Richard Smith-Unna et al.   GENOME RESEARCH

The power and promise of RNA-seq in ecology and evolution

(2016) Erica V. Todd et al.   MOLECULAR ECOLOGY

Divergence in gene expression within and between two closely related flycatcher species

(2016) Severin Uebbing et al.   MOLECULAR ECOLOGY

Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution?

(2015) Mariano Alvarez et al.   MOLECULAR ECOLOGY

The Molecular Basis of Phenotypic Convergence

(2014) Erica Bree Rosenblum et al.   Annual Review of Ecology Evolution and Systematics

Resting no more: re-defining telogen, the maintenance stage of the hair growth cycle

(2014) Mikhail Geyfman et al.   BIOLOGICAL REVIEWS

Snowshoe hares display limited phenotypic plasticity to mismatch in seasonal camouflage

(2014) M. Zimova et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Identification of Genes Important for Cutaneous Function Revealed by a Large Scale Reverse Genetic Screen in the Mouse

(2014) Tia DiTommaso et al.   PLoS Genetics

Calculating Sample Size Estimates for RNA Sequencing Data

(2013) Steven N. Hart et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Camouflage mismatch in seasonal coat color due to decreased snow duration

(2013) L. S. Mills et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Annual rhythms that underlie phenology: biological time-keeping meets environmental change

(2013) B. Helm et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Unravelling hair follicle-adipocyte communication

(2012) Barbara Schmidt et al.   EXPERIMENTAL DERMATOLOGY

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Rhythm changes of clock genes, apoptosis-related genes and atherosclerosis-related genes in apolipoprotein E knockout mice

(2011) Chen Xu et al.   CANADIAN JOURNAL OF CARDIOLOGY

The MADS box transcription factor MEF2C regulates melanocyte development and is a direct transcriptional target and partner of SOX10

(2011) P. Agarwal et al.   DEVELOPMENT

Photoperiod Regulates Vitamin A and Wnt/β-Catenin Signaling in F344 Rats

(2011) Gisela Helfer et al.   ENDOCRINOLOGY

Identification of Telogen Markers Underscores that Telogen Is Far from a Quiescent Hair Cycle Phase

(2011) Mikhail Geyfman et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Molecular spandrels: tests of adaptation at the genetic level

(2011) Rowan D. H. Barrett et al.   NATURE REVIEWS GENETICS

The Developmental Role of Agouti in Color Pattern Evolution

(2011) M. Manceau et al.   SCIENCE

Recurrent Introgression of Mitochondrial DNA Among Hares (Lepus spp.) Revealed by Species-Tree Inference and Coalescent Simulations

(2011) J. Melo-Ferreira et al.   SYSTEMATIC BIOLOGY

Biases in Illumina transcriptome sequencing caused by random hexamer priming

(2010) Kasper D. Hansen et al.   NUCLEIC ACIDS RESEARCH

Phenology, seasonal timing and circannual rhythms: towards a unified framework

(2010) M. E. Visser et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Convergence in pigmentation at multiple levels: mutations, genes and function

(2010) M. Manceau et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

MOULTS AND WINTER WHITENING IN THE MOUNTAIN HARE LEPUS TIMIDUS SCOTICUS, HILZHEIMER

(2010) Raymond Hewson   PROCEEDINGS OF THE ZOOLOGICAL SOCIETY OF LONDON

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Linking genotypes to phenotypes and fitness: how mechanistic biology can inform molecular ecology

(2009) ANNE C. DALZIEL et al.   MOLECULAR ECOLOGY

Circadian Clock Genes Contribute to the Regulation of Hair Follicle Cycling

(2009) Kevin K. Lin et al.   PLoS Genetics

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

(2008) S. Bauer et al.   BIOINFORMATICS

Identification of dkk4 as a target of Eda-A1/Edar pathway reveals an unexpected role of ectodysplasin as inhibitor of Wnt signalling in ectodermal placodes

(2008) Ingrid Fliniaux et al.   DEVELOPMENTAL BIOLOGY

The Melanocortin-3 Receptor Is Required for Entrainment to Meal Intake

(2008) G. M. Sutton et al.   JOURNAL OF NEUROSCIENCE