MicroRNA and mRNA interactions coordinate the immune response in non-lethal heat stressed Litopenaeus vannamei against AHPND-causing Vibrio parahaemolyticus

Toward understanding the origin and evolution of cellular organisms

(2019) Minoru Kanehisa   PROTEIN SCIENCE

Acute Hepatopancreatic Necrosis Disease (AHPND) related microRNAs in Litopenaeus vannamei infected with AHPND-causing strain of Vibrio parahemolyticus

(2018) Zhihong Zheng et al.   BMC GENOMICS

Shrimp humoral responses against pathogens: antimicrobial peptides and melanization

(2018) Anchalee Tassanakajon et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

First characterization of an anti-lipopolysaccharide factor (ALF) from hydrothermal vent shrimp: Insights into the immune function of deep-sea crustacean ALF

(2018) Han-jie Gu et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

WSSV-responsive gene expression under the influence of Pm VRP15 suppression

(2018) Phawida Tummamunkong et al.   FISH & SHELLFISH IMMUNOLOGY

Differentially expressed genes in hemocytes of Litopenaeus vannamei challenged with Vibrio parahaemolyticus AHPND (VP AHPND ) and VP AHPND toxin

(2018) Benedict A. Maralit et al.   FISH & SHELLFISH IMMUNOLOGY

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

(2018) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

Two host gut-derived lactic acid bacteria activate the proPO system and increase resistance to an AHPND-causing strain of Vibrio parahaemolyticus in the shrimp Litopenaeus vannamei

(2018) Sudarat Chomwong et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Identification of an anti-lipopolysaccharide factor AV-R isoform (LvALF AV-R) related to Vp_PirAB-like toxin resistance in Litopenaeus vannamei

(2018) Sasiwipa Tinwongger et al.   FISH & SHELLFISH IMMUNOLOGY

New approach for understanding genome variations in KEGG

(2018) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

HSP70 and HSP90 are involved in shrimp Penaeus vannamei tolerance to AHPND-causing strain of Vibrio parahaemolyticus after non-lethal heat shock

(2017) Wisarut Junprung et al.   FISH & SHELLFISH IMMUNOLOGY

Comparison of immune response in Pacific white shrimp, Litopenaeus vannamei, after knock down of Toll and IMD gene in vivo

(2016) Yongjie Liu et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Shrimp miRNAs regulate innate immune response against white spot syndrome virus infection

(2016) Napol Kaewkascholkul et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Differentially expressed transcripts in stomach of Penaeus monodon in response to AHPND infection

(2016) Wipasiri Soonthornchai et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Characterization and involvement of toll and IMD pathways in AHPND-infected shrimp

(2016) Mi-De Yeh et al.   FISH & SHELLFISH IMMUNOLOGY

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

(2016) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

Role of Penaeus monodon hemocyte homeostasis associated protein ( Pm HHAP) in regulation of caspase-mediated apoptosis

(2015) Kantamas Apitanyasai et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Pathogenesis of acute hepatopancreatic necrosis disease (AHPND) in shrimp

(2015) Hung-Chiao Lai et al.   FISH & SHELLFISH IMMUNOLOGY

RNA-seq analysis of Macrobrachium rosenbergii hepatopancreas in response to Vibrio parahaemolyticus infection

(2015) Rama Rao et al.   Gut Pathogens

Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud

(2015) Enis Afgan et al.   PLoS One

RNAi knock-down of shrimp Litopenaeus vannamei Toll gene and immune deficiency gene reveals their difference in regulating antimicrobial peptides transcription

(2014) Fujun Hou et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Determination of the infectious nature of the agent of acute hepatopancreatic necrosis syndrome affecting penaeid shrimp

(2013) L Tran et al.   DISEASES OF AQUATIC ORGANISMS

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Non-Lethal Heat Shock Increased Hsp70 and Immune Protein Transcripts but Not Vibrio Tolerance in the White-Leg Shrimp

(2013) Nguyen Hong Loc et al.   PLoS One

Drosophila Argonaute 1 and its miRNA biogenesis partners are required for oocyte formation and germline cell division

(2012) Ghows Azzam et al.   DEVELOPMENTAL BIOLOGY

Transglutaminase regulates immune-related genes in shrimp

(2012) Fernand F. Fagutao et al.   FISH & SHELLFISH IMMUNOLOGY

Signaling pathways regulating innate immune responses in shrimp

(2012) Fuhua Li et al.   FISH & SHELLFISH IMMUNOLOGY

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

The mammalian microRNA response to bacterial infections

(2012) Ana Eulalio et al.   RNA Biology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

(2011) S. Powell et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

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(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

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(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Expression and distribution of three heat shock protein genes under heat shock stress and under exposure to Vibrio harveyi in Penaeus monodon

(2010) Wanilada Rungrassamee et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Expression of HSP60 and HSP70 in white shrimp, Litopenaeus vannamei in response to bacterial challenge

(2010) Jun Zhou et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

A Review of the Major Penaeid Shrimp EST Studies and the Construction of a Shrimp Transcriptome Database Based on the ESTs from Four Penaeid Shrimp

(2010) Jiann-Horng Leu et al.   MARINE BIOTECHNOLOGY

Proteomic analysis of differentially expressed proteins in Penaeus monodon hemocytes after Vibrio harveyi infection

(2010) Kunlaya Somboonwiwat et al.   Proteome Science

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Gene silencing of a prophenoloxidase activating enzyme in the shrimp, Penaeus monodon, increases susceptibility to Vibrio harveyi infection

(2009) Walaiporn Charoensapsri et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Transglutaminase activity in the hematopoietic tissue of a crustacean, Pacifastacus leniusculus, importance in hemocyte homeostasis

(2008) Xionghui Lin et al.   BMC IMMUNOLOGY