RNA-seq analysis of Macrobrachium rosenbergii hepatopancreas in response to Vibrio parahaemolyticus infection

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Transcriptome Analysis of Pacific White Shrimp (Litopenaeus vannamei) Hepatopancreas in Response to Taura Syndrome Virus (TSV) Experimental Infection

(2013) Digang Zeng et al.   PLoS One

Transcriptome Sequencing and Analysis of Wild Amur Ide (Leuciscus waleckii) Inhabiting an Extreme Alkaline-Saline Lake Reveals Insights into Stress Adaptation

(2013) Jian Xu et al.   PLoS One

In-Depth Tanscriptomic Analysis on Giant Freshwater Prawns

(2013) Maizatul Izzah Mohd-Shamsudin et al.   PLoS One

Transcriptome Analysis of Litopenaeus vannamei in Response to White Spot Syndrome Virus Infection

(2013) Xiaohan Chen et al.   PLoS One

Sequencing and De Novo Analysis of the Hemocytes Transcriptome in Litopenaeus vannamei Response to White Spot Syndrome Virus Infection

(2013) Shuxia Xue et al.   PLoS One

Genome anatomy of the gastrointestinal pathogen, Vibrio parahaemolyticus of crustacean origin

(2013) Suma Tiruvayipati et al.   Gut Pathogens

Transcriptome analysis using next-generation sequencing

(2012) Kai-Oliver Mutz et al.   CURRENT OPINION IN BIOTECHNOLOGY

Molecular cloning, characterization and gene expression of an antioxidant enzyme catalase (MrCat) from Macrobrachium rosenbergii

(2012) Jesu Arockiaraj et al.   FISH & SHELLFISH IMMUNOLOGY

Immunological role of thiol-dependent peroxiredoxin gene in Macrobrachium rosenbergii

(2012) Jesu Arockiaraj et al.   FISH & SHELLFISH IMMUNOLOGY

Immune role of MrNFκBI-α, an IκB family member characterized in prawn M. rosenbergii

(2012) Jesu Arockiaraj et al.   FISH & SHELLFISH IMMUNOLOGY

Crustin, a WAP domain containing antimicrobial peptide from freshwater prawn Macrobrachium rosenbergii: Immune characterization

(2012) Jesu Arockiaraj et al.   FISH & SHELLFISH IMMUNOLOGY

Pattern Recognition Protein Binds to Lipopolysaccharide and β-1,3-Glucan and Activates Shrimp Prophenoloxidase System

(2012) Piti Amparyup et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

(2011) Barbara Feldmeyer et al.   BMC GENOMICS

De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification

(2011) R. Garg et al.   DNA RESEARCH

Bioinformatic characterization and gene expression pattern of apoptosis inhibitor from Macrobrachium rosenbergii challenged with infectious hypodermal and hematopoietic necrosis virus

(2011) Jesu Arockiaraj et al.   FISH & SHELLFISH IMMUNOLOGY

Gene profiling and characterization of arginine kinase-1 (MrAK-1) from freshwater giant prawn (Macrobrachium rosenbergii)

(2011) Jesu Arockiaraj et al.   FISH & SHELLFISH IMMUNOLOGY

Two types of calmodulin play different roles in Pacific white shrimp (Litopenaeus vannamei) defenses against Vibrio parahaemolyticus and WSSV infection

(2011) Pei-Feng Ji et al.   FISH & SHELLFISH IMMUNOLOGY

Pathogen Recognition by the Innate Immune System

(2011) Himanshu Kumar et al.   INTERNATIONAL REVIEWS OF IMMUNOLOGY

Viral diseases of the giant fresh water prawn Macrobrachium rosenbergii: A review

(2011) Jean-Robert Bonami et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Cationic Antimicrobial Peptides in Penaeid Shrimp

(2011) Anchalee Tassanakajon et al.   MARINE BIOTECHNOLOGY

Molecular cloning and expression analysis of signal transducer and activator of transcription (STAT) from the Chinese white shrimp Fenneropenaeus chinensis

(2011) Chen Sun et al.   MOLECULAR BIOLOGY REPORTS

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

A Dorsal homolog (FcDorsal) in the Chinese shrimp Fenneropenaeus chinensis is responsive to both bacteria and WSSV challenge

(2010) Fuhua Li et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Expression and distribution of three heat shock protein genes under heat shock stress and under exposure to Vibrio harveyi in Penaeus monodon

(2010) Wanilada Rungrassamee et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Identification of upregulated immune-related genes in Vibrio harveyi challenged Penaeus monodon postlarvae

(2010) S. Nayak et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptional regulation of extracellular copper zinc superoxide dismutase from white shrimp Litopenaeus vannamei following Vibrio alginolyticus and WSSV infection

(2010) Jianxiao Tian et al.   FISH & SHELLFISH IMMUNOLOGY

Expression of HSP60 and HSP70 in white shrimp, Litopenaeus vannamei in response to bacterial challenge

(2010) Jun Zhou et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Microarray Analyses of Shrimp Immune Responses

(2010) Takashi Aoki et al.   MARINE BIOTECHNOLOGY

A Review of the Major Penaeid Shrimp EST Studies and the Construction of a Shrimp Transcriptome Database Based on the ESTs from Four Penaeid Shrimp

(2010) Jiann-Horng Leu et al.   MARINE BIOTECHNOLOGY

Stylicins, a new family of antimicrobial peptides from the Pacific blue shrimp Litopenaeus stylirostris

(2010) J.L. Rolland et al.   MOLECULAR IMMUNOLOGY

Protein Folding in the Cytoplasm and the Heat Shock Response

(2010) R. M. Vabulas et al.   Cold Spring Harbor Perspectives in Biology

Applications of New Sequencing Technologies for Transcriptome Analysis

(2009) Olena Morozova et al.   Annual Review of Genomics and Human Genetics

A selenium-dependent glutathione peroxidase (Se-GPx) and two glutathione S-transferases (GSTs) from Chinese shrimp (Fenneropenaeus chinensis)

(2009) Qian Ren et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Glutathione S-transferase in the white shrimp Litopenaeus vannamei: Characterization and regulation under pH stress

(2009) Jun Zhou et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Beta-glucans as immunostimulant in vertebrates and invertebrates

(2009) S. Soltanian et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Expression of immune-related genes in the digestive organ of shrimp, Penaeus monodon, after an oral infection by Vibrio harveyi

(2009) Wipasiri Soonthornchai et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Recombinant ferritin protein protects Penaeus monodon infected by pathogenic Vibrio harveyi

(2009) B Maiti et al.   DISEASES OF AQUATIC ORGANISMS

cDNA cloning, identification, tissue localisation, and transcription profile of a transglutaminase from white shrimp, Litopenaeus vannamei, after infection by Vibrio alginolyticus

(2009) Maw-Sheng Yeh et al.   FISH & SHELLFISH IMMUNOLOGY

Molecular cloning and characterization of a heat shock protein 70 gene in swimming crab (Portunus trituberculatus)

(2009) Zhaoxia Cui et al.   FISH & SHELLFISH IMMUNOLOGY

Evolution of life history traits in Asian freshwater prawns of the genus Macrobrachium (Crustacea: Decapoda: Palaemonidae) based on multilocus molecular phylogenetic analysis

(2009) Daisy Wowor et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Next-generation DNA sequencing techniques

(2009) Wilhelm J. Ansorge   New Biotechnology

Next-generation sequencing technologies and their implications for crop genetics and breeding

(2009) Rajeev K. Varshney et al.   TRENDS IN BIOTECHNOLOGY

Social, economic, and production characteristics of giant river prawn Macrobrachium rosenbergii culture in Thailand

(2008) Vicki S. Schwantes et al.   AQUACULTURE

Characterization and pathogenicity studies of Vibrio parahaemolyticus isolated from diseased freshwater prawn, Macrobrachium rosenbergii (de Man)

(2008) Chinmayee Priyadarshini Khuntia et al.   AQUACULTURE RESEARCH

Membrane-associated stress proteins: More than simply chaperones

(2008) Ibolya Horváth et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Regulation of phagocytosis against bacterium by Rab GTPase in shrimp Marsupenaeus japonicus

(2008) R ZONG et al.   FISH & SHELLFISH IMMUNOLOGY

The effect of Vibrio alginolyticus infection on caspase-3 expression and activity in white shrimp Litopenaeus vannamei

(2008) C CHANG et al.   FISH & SHELLFISH IMMUNOLOGY

cDNA cloning, characterization and expression analysis of the antioxidant enzyme gene, catalase, of Chinese shrimp Fenneropenaeus chinensis

(2008) Q ZHANG et al.   FISH & SHELLFISH IMMUNOLOGY

A Toll receptor from Chinese shrimp Fenneropenaeus chinensis is responsive to Vibrio anguillarum infection

(2008) C YANG et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome Profiling Using Next-Generation Sequencing

(2008) Yan W. Asmann et al.   GASTROENTEROLOGY

Anti-lipopolysaccharide factor in Litopenaeus vannamei (LvALF): A broad spectrum antimicrobial peptide essential for shrimp immunity against bacterial and fungal infection

(2008) Enrique de la Vega et al.   MOLECULAR IMMUNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

Molecular cloning and characterization of a catalase gene from Zhikong scallop Chlamys farreri

(2007) Chenghua Li et al.   FISH & SHELLFISH IMMUNOLOGY

A hepatopancreas-specific C-type lectin from the Chinese shrimp Fenneropenaeus chinensis exhibits antimicrobial activity

(2007) Yun-Dong Sun et al.   MOLECULAR IMMUNOLOGY

Essential function of transglutaminase and clotting protein in shrimp immunity

(2007) Mary Beth Bacano Maningas et al.   MOLECULAR IMMUNOLOGY