Effects of Long-term Cotton Continuous Cropping on Soil Microbiome

Response of Soil Fungal Community Structure to Long-Term Continuous Soybean Cropping

(2019) Hang Liu et al.   Frontiers in Microbiology

The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome

(2019) Wencong Shi et al.   Microbiome

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

Rhizosphere microbiome structure alters to enable wilt resistance in tomato

(2018) Min-Jung Kwak et al.   NATURE BIOTECHNOLOGY

The microbiome and antibiotic resistance in integrated fishfarm water: Implications of environmental public health

(2018) Gary Klase et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Banana Fusarium Wilt Disease Incidence Is Influenced by Shifts of Soil Microbial Communities Under Different Monoculture Spans

(2017) Zongzhuan Shen et al.   MICROBIAL ECOLOGY

Large-scale identification of Gossypium hirsutum genes associated with Verticillium dahliae by comparative transcriptomic and reverse genetics analysis

(2017) Wenwei Zhang et al.   PLoS One

Distinct roles for soil fungal and bacterial communities associated with the suppression of vanilla Fusarium wilt disease

(2017) Wu Xiong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Temporal patterns of cotton Fusarium and Verticillium wilt in Jiangsu coastal areas of China

(2017) Xiaogang Li et al.   Scientific Reports

Significant relationship between soil bacterial community structure and incidence of bacterial wilt disease under continuous cropping system

(2016) Siyuan She et al.   ARCHIVES OF MICROBIOLOGY

Different responses of rhizosphere and non-rhizosphere soil microbial communities to consecutive Piper nigrum L. monoculture

(2016) Zhigang Li et al.   Scientific Reports

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distribution of sediment bacterial and archaeal communities in plateau freshwater lakes

(2014) Jingxu Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Bacterial Diversity in the Rhizosphere of Cucumbers Grown in Soils Covering a Wide Range of Cucumber Cropping Histories and Environmental Conditions

(2014) Yongqiang Tian et al.   MICROBIAL ECOLOGY

Different Continuous Cropping Spans Significantly Affect Microbial Community Membership and Structure in a Vanilla-Grown Soil as Revealed by Deep Pyrosequencing

(2014) Wu Xiong et al.   MICROBIAL ECOLOGY

Microbial Community Diversities and Taxa Abundances in Soils along a Seven-Year Gradient of Potato Monoculture Using High Throughput Pyrosequencing Approach

(2014) Xing Liu et al.   PLoS One

Fungal pathogen accumulation at the expense of plant-beneficial fungi as a consequence of consecutive peanut monoculturing

(2014) Xiao-gang Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Induced soil microbial suppression of banana fusarium wilt disease using compost and biofertilizers to improve yield and quality

(2013) Zongzhuan Shen et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Manipulating the soil microbiome to increase soil health and plant fertility

(2012) Jacqueline M. Chaparro et al.   BIOLOGY AND FERTILITY OF SOILS

Colonization in cotton plants by a green fluorescent protein labelled strain of Verticillium dahliae

(2012) Wen-Wei Zhang et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Cotton gene expression profiles in resistant Gossypium hirsutum cv. Zhongzhimian KV1 responding to Verticillium dahliae strain V991 infection

(2012) Wen-Wei Zhang et al.   MOLECULAR BIOLOGY REPORTS

Correlations between Root-Associated Microorganisms and Peach Replant Disease Symptoms in a California Soil

(2012) Jiue-in Yang et al.   PLoS One

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Meeting the demand for crop production: the challenge of yield decline in crops grown in short rotations

(2011) Amanda J. Bennett et al.   BIOLOGICAL REVIEWS

The iron-oxidizing proteobacteria

(2011) S. Hedrich et al.   MICROBIOLOGY-SGM

Microbial Communities Associated with Potato Common Scab-Suppressive Soil Determined by Pyrosequencing Analyses

(2011) Noah Rosenzweig et al.   PLANT DISEASE

Phylogenetics and Taxonomy of the Fungal Vascular Wilt Pathogen Verticillium, with the Descriptions of Five New Species

(2011) Patrik Inderbitzin et al.   PLoS One

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Soil Acidification from Long-Term Use of Nitrogen Fertilizers on Winter Wheat

(2011) Jackie L. Schroder et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Effect of monoculture soybean on soil microbial community in the Northeast China

(2009) Chunge Li et al.   PLANT AND SOIL

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

(2009) James Robert White et al.   PLoS Computational Biology

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Differences in the composition and diversity of bacterial communities from agricultural and forest soils

(2007) Rima Upchurch et al.   SOIL BIOLOGY & BIOCHEMISTRY