Transcriptomic and open chromatin atlas of high-resolution anatomical regions in the rhesus macaque brain
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Title
Transcriptomic and open chromatin atlas of high-resolution anatomical regions in the rhesus macaque brain
Authors
Keywords
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Journal
Nature Communications
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-01-24
DOI
10.1038/s41467-020-14368-z
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Note: Only part of the references are listed.- EnrichedHeatmap: an R/Bioconductor package for comprehensive visualization of genomic signal associations
- (2018) Zuguang Gu et al. BMC GENOMICS
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- (2018) John F. Fullard et al. GENOME RESEARCH
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- (2018) Chuan Xu et al. GENOME RESEARCH
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- (2018) Pieter-Jan Volders et al. NUCLEIC ACIDS RESEARCH
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- (2018) Adam Frankish et al. NUCLEIC ACIDS RESEARCH
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- (2018) Ying Zhu et al. SCIENCE
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- (2018) Bruna Valério-Gomes et al. Frontiers in Neuroanatomy
- Heme Oxygenase-1 and Brain Oxysterols Metabolism Are Linked to Egr-1 Expression in Aged Mice Cortex, but Not in Hippocampus
- (2018) Paolo Rosa et al. Frontiers in Aging Neuroscience
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- (2017) Siling Liu et al. GENOME RESEARCH
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- (2017) Yijing Su et al. NATURE NEUROSCIENCE
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- (2017) Anne Cathrine Nøhr et al. NEUROCHEMISTRY INTERNATIONAL
- Ensembl 2018
- (2017) Daniel R Zerbino et al. NUCLEIC ACIDS RESEARCH
- CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features
- (2017) Yu-Jian Kang et al. NUCLEIC ACIDS RESEARCH
- NONCODEV5: a comprehensive annotation database for long non-coding RNAs
- (2017) ShuangSang Fang et al. NUCLEIC ACIDS RESEARCH
- Molecular and cellular reorganization of neural circuits in the human lineage
- (2017) André M. M. Sousa et al. SCIENCE
- Reducing mitochondrial reads in ATAC-seq using CRISPR/Cas9
- (2017) Lindsey Montefiori et al. Scientific Reports
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- (2016) Liguo Wang et al. BMC BIOINFORMATICS
- A comprehensive transcriptional map of primate brain development
- (2016) Trygve E. Bakken et al. NATURE
- Evolution of Osteocrin as an activity-regulated factor in the primate brain
- (2016) Bulent Ataman et al. NATURE
- TACO produces robust multisample transcriptome assemblies from RNA-seq
- (2016) Yashar S Niknafs et al. NATURE METHODS
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- (2016) Marit W Vermunt et al. NATURE NEUROSCIENCE
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- (2016) Charles G Jennings et al. NATURE NEUROSCIENCE
- PTBP1 and PTBP2 Serve Both Specific and Redundant Functions in Neuronal Pre-mRNA Splicing
- (2016) John K. Vuong et al. Cell Reports
- ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
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- (2015) Ahmed Mahfouz et al. METHODS
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- (2015) Daehwan Kim et al. NATURE METHODS
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- (2015) Aaron M Newman et al. NATURE METHODS
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- (2015) Marina Lizio et al. GENOME BIOLOGY
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- (2014) Aleksey V Zimin et al. Biology Direct
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- (2014) Jeremy A. Miller et al. NATURE
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- The role of long non-coding RNAs in neurodevelopment, brain function and neurological disease
- (2014) T. C. Roberts et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
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- (2013) Jason D Buenrostro et al. NATURE METHODS
- Neuron-specific chromatin remodeling: A missing link in epigenetic mechanisms underlying synaptic plasticity, memory, and intellectual disability disorders
- (2013) Annie Vogel-Ciernia et al. NEUROPHARMACOLOGY
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- (2013) Liguo Wang et al. NUCLEIC ACIDS RESEARCH
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- (2012) Caryn S. Ross-Innes et al. NATURE
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- (2012) Michael J. Hawrylycz et al. NATURE
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- (2011) Adam Ameur et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
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- (2010) Reinhard Schliebs et al. BEHAVIOURAL BRAIN RESEARCH
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- (2009) Richard Passingham CURRENT OPINION IN NEUROBIOLOGY
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- (2009) Zhengliang Gao et al. NATURE NEUROSCIENCE
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
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- (2008) Elizabeth A. Alcamo et al. NEURON
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