Impact of commonly used drugs on the composition and metabolic function of the gut microbiota

The 1000IBD project: multi-omics data of 1000 inflammatory bowel disease patients; data release 1

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Transient Osmotic Perturbation Causes Long-Term Alteration to the Gut Microbiota

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Bile Acid Deficiency in a Subgroup of Patients With Irritable Bowel Syndrome With Constipation Based on Biomarkers in Serum and Fecal Samples

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The influence of long-term use of proton pump inhibitors on the gut microbiota: an age-sex-matched case-control study

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Gut microbiota associations with common diseases and prescription medications in a population-based cohort

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Pharmacomicrobiomics: a novel route towards personalized medicine?

(2018) Marwah Doestzada et al.   Protein & Cell

Extensive impact of non-antibiotic drugs on human gut bacteria

(2018) Lisa Maier et al.   NATURE

Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome

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Gut microbiome structure and metabolic activity in inflammatory bowel disease

(2018) Eric A. Franzosa et al.   Nature Microbiology

Identification of an Intestinal Microbiota Signature Associated With Severity of Irritable Bowel Syndrome

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Metformin alters the gut microbiome of individuals with treatment-naive type 2 diabetes, contributing to the therapeutic effects of the drug

(2017) Hao Wu et al.   NATURE MEDICINE

Drug Repositioning in Inflammatory Bowel Disease Based on Genetic Information

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Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

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Population-level analysis of gut microbiome variation

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An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis

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Characterization of Microbiota in Children with Chronic Functional Constipation

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The assembly and disassembly of the AcrAB-TolC three-component multidrug efflux pump

(2015) Reinke Tobias Müller et al.   BIOLOGICAL CHEMISTRY

Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence

(2015) Monika Schaubeck et al.   GUT

Proton pump inhibitors affect the gut microbiome

(2015) Floris Imhann et al.   GUT

Proton pump inhibitors alter the composition of the gut microbiota

(2015) Matthew A Jackson et al.   GUT

Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates

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Irritable Bowel Syndrome

(2015) William D. Chey et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

(2015) Kristoffer Forslund et al.   NATURE

The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment

(2015) Xuan Zhang et al.   NATURE MEDICINE

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

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Cohort profile: LifeLines DEEP, a prospective, general population cohort study in the northern Netherlands: study design and baseline characteristics

(2015) Ettje F Tigchelaar et al.   BMJ Open

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED

(2015) James Kaminski et al.   PLoS Computational Biology

Arthritis susceptibility and the gut microbiome

(2014) Veena Taneja   FEBS LETTERS

Methane and Hydrogen Positivity on Breath Test Is Associated With Greater Body Mass Index and Body Fat

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IntestinalMethanobrevibacter smithiibut not total bacteria is related to diet-induced weight gain in rats

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Ulcerative colitis

(2012) Ingrid Ordás et al.   LANCET

Crohn's disease

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Succession in the Gut Microbiome following Antibiotic and Antibody Therapies for Clostridium difficile

(2012) Gregory L. Peterfreund et al.   PLoS One

The Role of l-arginine in Inclusion Complexes of Omeprazole with Cyclodextrins

(2010) Ana Figueiras et al.   AAPS PHARMSCITECH

METAL: fast and efficient meta-analysis of genomewide association scans

(2010) C. J. Willer et al.   BIOINFORMATICS

Identification and Characterization of a Novel Multidrug Resistance Operon, mdtRP (yusOP), of Bacillus subtilis

(2009) J.-Y. Kim et al.   JOURNAL OF BACTERIOLOGY

Pharmacometabonomic identification of a significant host-microbiome metabolic interaction affecting human drug metabolism

(2009) T. A. Clayton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effect of Veillonella parvula on the antimicrobial resistance and gene expression of Streptococcus mutans grown in a dual-species biofilm

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