Multimodal image registration and connectivity analysis for integration of connectomic data from microscopy to MRI
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Multimodal image registration and connectivity analysis for integration of connectomic data from microscopy to MRI
Authors
Keywords
-
Journal
Nature Communications
Volume 10, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-12-03
DOI
10.1038/s41467-019-13374-0
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Towards Differential Connectomics with NeuroVIISAS
- (2018) Sebastian Schwanke et al. NEUROINFORMATICS
- RNA-Sequencing Analysis Revealed a Distinct Motor Cortex Transcriptome in Spontaneously Recovered Mice After Stroke
- (2018) Masaki Ito et al. STROKE
- The separate effects of lipids and proteins on brain MRI contrast revealed through tissue clearing
- (2017) Christoph Leuze et al. NEUROIMAGE
- Prediction of regional functional impairment following experimental stroke via connectome analysis
- (2017) O. Schmitt et al. Scientific Reports
- Wiring and Molecular Features of Prefrontal Ensembles Representing Distinct Experiences
- (2016) Li Ye et al. CELL
- Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes
- (2016) Nicolas Renier et al. CELL
- Shrinkage-mediated imaging of entire organs and organisms using uDISCO
- (2016) Chenchen Pan et al. NATURE METHODS
- An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging
- (2016) Jesper L.R. Andersson et al. NEUROIMAGE
- aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data
- (2016) Christian J. Niedworok et al. Nature Communications
- Prefrontal Ischemia in the Rat Leads to Secondary Damage and Inflammation in Remote Gray and White Matter Regions
- (2016) Nina Weishaupt et al. Frontiers in Neuroscience
- Precise Characterization of the Penumbra Revealed by MRI: A Modified Photothrombotic Stroke Model Study
- (2016) Cheng Qian et al. PLoS One
- Simple, Scalable Proteomic Imaging for High-Dimensional Profiling of Intact Systems
- (2015) Evan Murray et al. CELL
- Clarifying Tissue Clearing
- (2015) Douglas S. Richardson et al. CELL
- A Diffusion MRI Tractography Connectome of the Mouse Brain and Comparison with Neuronal Tracer Data
- (2015) Evan Calabrese et al. CEREBRAL CORTEX
- Structure tensor analysis of serial optical coherence scanner images for mapping fiber orientations and tractography in the brain
- (2015) Hui Wang et al. JOURNAL OF BIOMEDICAL OPTICS
- Neuroinformatics of the Allen Mouse Brain Connectivity Atlas
- (2015) Leonard Kuan et al. METHODS
- ScaleS: an optical clearing palette for biological imaging
- (2015) Hiroshi Hama et al. NATURE NEUROSCIENCE
- Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging
- (2015) Etsuo A Susaki et al. Nature Protocols
- The connectomics of brain disorders
- (2015) Alex Fornito et al. NATURE REVIEWS NEUROSCIENCE
- 3D structure tensor analysis of light microscopy data for validating diffusion MRI
- (2015) Ahmad Raza Khan et al. NEUROIMAGE
- A diffusion tensor MRI atlas of the postmortem rhesus macaque brain
- (2015) Evan Calabrese et al. NEUROIMAGE
- Diaschisis: past, present, future
- (2014) Emmanuel Carrera et al. BRAIN
- Whole-Brain Imaging with Single-Cell Resolution Using Chemical Cocktails and Computational Analysis
- (2014) Etsuo A. Susaki et al. CELL
- iDISCO: A Simple, Rapid Method to Immunolabel Large Tissue Samples for Volume Imaging
- (2014) Nicolas Renier et al. CELL
- A mesoscale connectome of the mouse brain
- (2014) Seung Wook Oh et al. NATURE
- Advanced CLARITY for rapid and high-resolution imaging of intact tissues
- (2014) Raju Tomer et al. Nature Protocols
- Stroke and the Connectome: How Connectivity Guides Therapeutic Intervention
- (2014) Gergely Silasi et al. NEURON
- Cellular correlates of longitudinal diffusion tensor imaging of axonal degeneration following hypoxic–ischemic cerebral infarction in neonatal rats
- (2014) Ursula I. Tuor et al. NeuroImage-Clinical
- TANGO: a generic tool for high-throughput 3D image analysis for studying nuclear organization
- (2013) Jean Ollion et al. BIOINFORMATICS
- Structural and molecular interrogation of intact biological systems
- (2013) Kwanghun Chung et al. NATURE
- The brain reward circuitry in mood disorders
- (2013) Scott J. Russo et al. NATURE REVIEWS NEUROSCIENCE
- The WU-Minn Human Connectome Project: An overview
- (2013) David C. Van Essen et al. NEUROIMAGE
- MRtrix: Diffusion tractography in crossing fiber regions
- (2012) J-Donald Tournier et al. INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY
- Extent of Bilateral Neuronal Network Reorganization and Functional Recovery in Relation to Stroke Severity
- (2012) M. P. A. van Meer et al. JOURNAL OF NEUROSCIENCE
- The vascular neural network—a new paradigm in stroke pathophysiology
- (2012) John H. Zhang et al. Nature Reviews Neurology
- Structural neurobiology: missing link to a mechanistic understanding of neural computation
- (2012) Winfried Denk et al. NATURE REVIEWS NEUROSCIENCE
- Changes in T2 relaxation time after stroke reflect clearing processes
- (2012) Daniel-Christoph Wagner et al. NEUROIMAGE
- Examining brain microstructure using structure tensor analysis of histological sections
- (2012) Matthew D. Budde et al. NEUROIMAGE
- Reorganization of cerebral networks after stroke: new insights from neuroimaging with connectivity approaches
- (2011) C. Grefkes et al. BRAIN
- Mapping of fluorescent protein-expressing neurons and axon pathways in adult and developing Thy1-eYFP-H transgenic mice
- (2010) Cesar Porrero et al. BRAIN RESEARCH
- A robust methodology for in vivo T1 mapping
- (2010) Joëlle K. Barral et al. MAGNETIC RESONANCE IN MEDICINE
- Track-density imaging (TDI): Super-resolution white matter imaging using whole-brain track-density mapping
- (2010) Fernando Calamante et al. NEUROIMAGE
- A reproducible evaluation of ANTs similarity metric performance in brain image registration
- (2010) Brian B. Avants et al. NEUROIMAGE
- A white matter stroke model in the mouse: Axonal damage, progenitor responses and MRI correlates
- (2009) Elif G. Sozmen et al. JOURNAL OF NEUROSCIENCE METHODS
- A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale
- (2009) Jason W. Bohland et al. PLoS Computational Biology
- Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain
- (2007) B AVANTS et al. MEDICAL IMAGE ANALYSIS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started