Soil microbial diversity drops with land‐use change in a high mountain temperate forest: a metagenomics survey

Land use is the main driver of soil organic carbon spatial distribution in a high mountain ecosystem

(2019) Carmine Fusaro et al.   PeerJ

Legacy effects of land use on soil nitrous oxide emissions in annual crop and perennial grassland ecosystems

(2018) Michael Abraha et al.   ECOLOGICAL APPLICATIONS

Rhizobia: from saprophytes to endosymbionts

(2018) Philip Poole et al.   NATURE REVIEWS MICROBIOLOGY

Archaea Are Interactive Components of Complex Microbiomes

(2018) Christine Moissl-Eichinger et al.   TRENDS IN MICROBIOLOGY

New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes

(2018) Marie E. Kroeger et al.   Frontiers in Microbiology

Soil microbiomes with distinct assemblies through vertical soil profiles drive the cycling of multiple nutrients in reforested ecosystems

(2018) Shuo Jiao et al.   Microbiome

Populations and assemblages living on the edge: dung beetles responses to forests-pasture ecotones

(2018) Ana Paola Martínez-Falcón et al.   PeerJ

Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change

(2017) Salvador Lladó et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

An analytical review of Halffter's Mexican transition zone, and its relevance for evolutionary biogeography, ecology and biogeographical regionalization

(2017) GONZALO HALFFTER et al.   ZOOTAXA

Soil Viral Communities Vary Temporally and along a Land Use Transect as Revealed by Virus-Like Particle Counting and a Modified Community Fingerprinting Approach (fRAPD)

(2017) Anja Narr et al.   Frontiers in Microbiology

Metagenomic analysis exploring taxonomic and functional diversity of soil microbial communities in Chilean vineyards and surrounding native forests

(2017) Luis E. Castañeda et al.   PeerJ

Patterns of plant species richness and composition in deciduous oak forests in relation to environmental drivers

(2016) M. Slezák et al.   COMMUNITY ECOLOGY

MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices

(2016) Dinghua Li et al.   METHODS

Occurrence of Stenotrophomonas maltophilia in agricultural soils and antibiotic resistance properties

(2016) Amélie Deredjian et al.   RESEARCH IN MICROBIOLOGY

16S metagenomics reveals changes in the soil bacterial community driven by soil organic C, N-fertilizer and tillage-crop residue management

(2016) Yosef Chávez-Romero et al.   SOIL & TILLAGE RESEARCH

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Non-symbiotic Bradyrhizobium ecotypes dominate North American forest soils

(2015) David VanInsberghe et al.   ISME Journal

Soil-Borne Microbiome: Linking Diversity to Function

(2015) Lucas W. Mendes et al.   MICROBIAL ECOLOGY

Unifying Species Diversity, Phylogenetic Diversity, Functional Diversity, and Related Similarity and Differentiation Measures Through Hill Numbers

(2014) Anne Chao et al.   Annual Review of Ecology Evolution and Systematics

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Effect of different long-term fertilization regimes on the viral community in an agricultural soil of Southern China

(2014) Lin Chen et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Land-use legacies regulate decomposition dynamics following bioenergy crop conversion

(2014) Cynthia M. Kallenbach et al.   Global Change Biology Bioenergy

Intensive agriculture reduces soil biodiversity across Europe

(2014) Maria A. Tsiafouli et al.   GLOBAL CHANGE BIOLOGY

Deforestation and Cultivation with Maize (Zea maysL.) has a Profound Effect on the Bacterial Community Structure in Soil

(2014) Elizabeth Selene Gómez-Acata et al.   LAND DEGRADATION & DEVELOPMENT

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Dynamics of Soil Bacterial Communities in Response to Repeated Application of Manure Containing Sulfadiazine

(2014) Guo-Chun Ding et al.   PLoS One

Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses

(2014) B. L. Hurwitz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Phylogenetic beta diversity, similarity, and differentiation measures based on Hill numbers

(2013) Chun-Huo Chiu et al.   ECOLOGICAL MONOGRAPHS

Stability of soil microbial structure and activity depends on microbial diversity

(2013) Vincent Tardy et al.   Environmental Microbiology Reports

Identification of Cellulose-Responsive Bacterial and Fungal Communities in Geographically and Edaphically Different Soils by Using Stable Isotope Probing

(2012) Stephanie A. Eichorst et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Proposing a resolution to debates on diversity partitioning

(2012) Anne Chao et al.   ECOLOGY

EFFECTS OF CONVERTING FOREST TO AVOCADO ORCHARDS ON TOPSOIL PROPERTIES IN THE TRANS-MEXICAN VOLCANIC SYSTEM, MEXICO

(2012) M. Bravo-Espinosa et al.   LAND DEGRADATION & DEVELOPMENT

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Environmental and Gut Bacteroidetes: The Food Connection

(2011) François Thomas et al.   Frontiers in Microbiology

Initial community evenness favours functionality under selective stress

(2009) Lieven Wittebolle et al.   NATURE