Comparative genomic analysis reveals an ‘open’ pan‐genome of African swine fever virus

Genome comparison of African swine fever virus China/2018/AnhuiXCGQ strain and related European p72 Genotype II strains

(2019) Jingyue Bao et al.   Transboundary and Emerging Diseases

Genome sequences derived from pig and dried blood pig feed samples provide important insights into the transmission of African swine fever virus in China in 2018

(2019) Xuexia Wen et al.   Emerging Microbes & Infections

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Crystal Structure of African Swine Fever Virus dUTPase Reveals a Potential Drug Target

(2019) Changyao Li et al.   mBio

OUP accepted manuscript

(2018)   BIOINFORMATICS

From “A”IV to “Z”IKV: Attacks from Emerging and Re-emerging Pathogens

(2018) George F. Gao   CELL

CSAR-web: a web server of contig scaffolding using algebraic rearrangements

(2018) Kun-Tze Chen et al.   NUCLEIC ACIDS RESEARCH

African swine fever: A re-emerging viral disease threatening the global pig industry

(2018) P.J. Sánchez-Cordón et al.   VETERINARY JOURNAL

A Large Open Pangenome and a Small Core Genome for Giant Pandoraviruses

(2018) Sarah Aherfi et al.   Frontiers in Microbiology

Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria

(2018) Harry A Thorpe et al.   GigaScience

Emergence of African Swine Fever in China, 2018

(2018) Xintao Zhou et al.   Transboundary and Emerging Diseases

VFDB 2019: a comparative pathogenomic platform with an interactive web interface

(2018) Bo Liu et al.   NUCLEIC ACIDS RESEARCH

Victors: a web-based knowledge base of virulence factors in human and animal pathogens

(2018) Samantha Sayers et al.   NUCLEIC ACIDS RESEARCH

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

(2018) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

DNA-Binding Properties of African Swine Fever Virus pA104R, a Histone-Like Protein Involved in Viral Replication and Transcription

(2017) Gonçalo Frouco et al.   JOURNAL OF VIROLOGY

Genetic characterization of African swine fever virus isolates from soft ticks at the wildlife/domestic interface in Mozambique and identification of a novel genotype

(2017) C. J. Quembo et al.   Transboundary and Emerging Diseases

African Swine Fever Virus: A Review

(2017) et al.   Viruses-Basel

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

Comparative Genomics of Herpesviridae Family to Look for Potential Signatures of Human Infecting Strains

(2016) Vikas Sharma et al.   International Journal of Genomics

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Generation of an attenuated Tiantan vaccinia virus by deletion of the ribonucleotide reductase large subunit

(2014) Shifu Kan et al.   ARCHIVES OF VIROLOGY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

Pandoraviruses: Amoeba Viruses with Genomes Up to 2.5 Mb Reaching That of Parasitic Eukaryotes

(2013) N. Philippe et al.   SCIENCE

De novo assembly of highly diverse viral populations

(2012) Xiao Yang et al.   BMC GENOMICS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Review of the sylvatic cycle of African swine fever in sub-Saharan Africa and the Indian ocean

(2012) F. Jori et al.   VIRUS RESEARCH

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Ribonucleotide reduction - horizontal transfer of a required function spans all three domains

(2010) Daniel Lundin et al.   BMC EVOLUTIONARY BIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS