De novo identification of satellite DNAs in the sequenced genomes of Drosophila virilis and D. americana using the RepeatExplorer and TAREAN pipelines
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
De novo identification of satellite DNAs in the sequenced genomes of Drosophila virilis and D. americana using the RepeatExplorer and TAREAN pipelines
Authors
Keywords
-
Journal
PLoS One
Volume 14, Issue 12, Pages e0223466
Publisher
Public Library of Science (PLoS)
Online
2019-12-20
DOI
10.1371/journal.pone.0223466
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Satellitome landscape analysis of Megaleporinus macrocephalus (Teleostei, Anostomidae) reveals intense accumulation of satellite sequences on the heteromorphic sex chromosome
- (2019) Ricardo Utsunomia et al. Scientific Reports
- The cellular mechanisms and consequences of centromere drive
- (2018) Lisa E Kursel et al. CURRENT OPINION IN CELL BIOLOGY
- Variable Rates of Simple Satellite Gains across the Drosophila Phylogeny
- (2018) Kevin H -C Wei et al. MOLECULAR BIOLOGY AND EVOLUTION
- Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing
- (2018) Laura Ávila Robledillo et al. Scientific Reports
- Single-molecule sequencing resolves the detailed structure of complex satellite DNA loci inDrosophila melanogaster
- (2017) Daniel E. Khost et al. GENOME RESEARCH
- TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads
- (2017) Petr Novák et al. NUCLEIC ACIDS RESEARCH
- High-throughput analysis of the satellitome revealed enormous diversity of satellite DNAs in the neo-Y chromosome of the cricket Eneoptera surinamensis
- (2017) Octavio Manuel Palacios-Gimenez et al. Scientific Reports
- Hawaiian Drosophila genomes: size variation and evolutionary expansions
- (2016) Elysse M. Craddock et al. GENETICA
- The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
- (2016) Enis Afgan et al. NUCLEIC ACIDS RESEARCH
- Helitrons shaping the genomic architecture of Drosophila: enrichment of DINE-TR1 in α- and β-heterochromatin, satellite DNA emergence, and piRNA expression
- (2015) Guilherme B. Dias et al. CHROMOSOME RESEARCH
- Structural and functional liaisons between transposable elements and satellite DNAs
- (2015) Nevenka Meštrović et al. CHROMOSOME RESEARCH
- Repetitive DNA in eukaryotic genomes
- (2015) Maria Assunta Biscotti et al. CHROMOSOME RESEARCH
- Genome-wide analysis of tandem repeats inTribolium castaneumgenome reveals abundant and highly dynamic tandem repeat families with satellite DNA features in euchromatic chromosomal arms
- (2015) Martina Pavlek et al. DNA RESEARCH
- Next-generation sequencing detects repetitive elements expansion in giant genomes of annual killifish genus Austrolebias (Cyprinodontiformes, Rivulidae)
- (2015) G. García et al. GENETICA
- Tetris Is a Foldback Transposon that Provided the Building Blocks for an Emerging Satellite DNA of Drosophila virilis
- (2014) Guilherme B. Dias et al. Genome Biology and Evolution
- Repetitive centromeric satellite RNA is essential for kinetochore formation and cell division
- (2014) Silvana Rošić et al. JOURNAL OF CELL BIOLOGY
- Correlated variation and population differentiation in satellite DNA abundance among lines ofDrosophila melanogaster
- (2014) Kevin H.-C. Wei et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
- (2013) P. Novak et al. BIOINFORMATICS
- Medium-sized tandem repeats represent an abundant component of the Drosophila virilis genome
- (2013) Murat A Abdurashitov et al. BMC GENOMICS
- Drosophila americana as a Model Species for Comparative Studies on the Molecular Basis of Phenotypic Variation
- (2013) Nuno A. Fonseca et al. Genome Biology and Evolution
- Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution
- (2013) Daniël P Melters et al. GENOME BIOLOGY
- The 1.688 Repetitive DNA of Drosophila: Concerted Evolution at Different Genomic Scales and Association with Genes
- (2011) Gustavo C. S. Kuhn et al. MOLECULAR BIOLOGY AND EVOLUTION
- Resolving the phylogenetic relationships and evolutionary history of the Drosophila virilis group using multilocus data
- (2011) Ramiro Morales-Hojas et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Repetitive DNA and next-generation sequencing: computational challenges and solutions
- (2011) Todd J. Treangen et al. NATURE REVIEWS GENETICS
- Species-Specific Heterochromatin Prevents Mitotic Chromosome Segregation to Cause Hybrid Lethality in Drosophila
- (2009) Patrick M. Ferree et al. PLOS BIOLOGY
- Sequence analysis, chromosomal distribution and long-range organization show that rapid turnover of new and old pBuM satellite DNA repeats leads to different patterns of variation in seven species of the Drosophila buzzatii cluster
- (2008) Gustavo C. S. Kuhn et al. CHROMOSOME RESEARCH
- Genome size diversity in the family Drosophilidae
- (2008) T R Gregory et al. HEREDITY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now