Structural evolution drives diversification of the large LRR‐RLK gene family

A Fruitful Journey: Pollen Tube Navigation from Germination to Fertilization

(2019) Mark A. Johnson et al.   Annual Review of Plant Biology

Evolution of buffering in a genetic circuit controlling plant stem cell proliferation

(2019) Daniel Rodriguez-Leal et al.   NATURE GENETICS

Genes and gene models, an important distinction

(2019) James C. Schnable   NEW PHYTOLOGIST

The FERONIA Receptor Kinase Maintains Cell-Wall Integrity during Salt Stress through Ca 2+ Signaling

(2018) Wei Feng et al.   CURRENT BIOLOGY

An ancient Sec10–formin fusion provides insights into actin-mediated regulation of exocytosis

(2018) Peter A.C. van Gisbergen et al.   JOURNAL OF CELL BIOLOGY

Plant cell surface receptor-mediated signaling – a common theme amid diversity

(2018) Yunxia He et al.   JOURNAL OF CELL SCIENCE

Renewing Felsenstein’s phylogenetic bootstrap in the era of big data

(2018) F. Lemoine et al.   NATURE

Synthetic MicroProteins: Versatile Tools for Posttranslational Regulation of Target Proteins

(2018) Ulla Dolde et al.   PLANT PHYSIOLOGY

The Receptor-Like Kinase AtVRLK1 Regulates Secondary Cell Wall Thickening

(2018) Cheng Huang et al.   PLANT PHYSIOLOGY

Plant cell surface molecular cypher: Receptor-like proteins and their roles in immunity and development

(2018) Pierce A. Jamieson et al.   PLANT SCIENCE

Mechanistic basis for the activation of plant membrane receptor kinases by SERK-family coreceptors

(2018) Ulrich Hohmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The CLAVATA receptor FASCIATED EAR2 responds to distinct CLE peptides by signaling through two downstream effectors

(2018) Byoung Il Je et al.   eLife

FERONIA Receptor Kinase Contributes to Plant Immunity by Suppressing Jasmonic Acid Signaling in Arabidopsis thaliana

(2018) Hongqing Guo et al.   CURRENT BIOLOGY

Evolution and Expression Characteristics of Receptor-Like Cytoplasmic Protein Kinases in Maize, Rice and Arabidopsis

(2018) Mingxia Fan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

Cross-Species Genome-Wide Identification of Evolutionary Conserved MicroProteins

(2017) Daniel Straub et al.   Genome Biology and Evolution

Ortholog-Finder: A Tool for Constructing an Ortholog Data Set

(2016) Tokumasa Horiike et al.   Genome Biology and Evolution

Proteins with Highly Evolvable Domain Architectures Are Nonessential but Highly Retained

(2016) Chia-Hsin Hsu et al.   MOLECULAR BIOLOGY AND EVOLUTION

SERK Family Receptor-like Kinases Function as Co-receptors with PXY for Plant Vascular Development

(2016) Heqiao Zhang et al.   Molecular Plant

Signaling from maize organ primordia via FASCIATED EAR3 regulates stem cell proliferation and yield traits

(2016) Byoung Il Je et al.   NATURE GENETICS

Evolutionary dynamics of the Leucine-Rich Repeats Receptor-Like Kinase (LRR-RLK) subfamily in angiosperms.

(2016) Iris Fischer et al.   PLANT PHYSIOLOGY

Integration of omic networks in a developmental atlas of maize

(2016) J. W. Walley et al.   SCIENCE

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

Ligand-Induced Receptor-like Kinase Complex Regulates Floral Organ Abscission in Arabidopsis

(2016) Xiangzong Meng et al.   Cell Reports

MicroProtein-Mediated Recruitment of CONSTANS into a TOPLESS Trimeric Complex Represses Flowering in Arabidopsis

(2016) Moritz Graeff et al.   PLoS Genetics

Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes

(2016) Kyuha Choi et al.   PLoS Genetics

Mechanistic insight into a peptide hormone signaling complex mediating floral organ abscission

(2016) Julia Santiago et al.   eLife

A unique RPW8-encoding class of genes that originated in early land plants and evolved through domain fission, fusion, and duplication

(2016) Yan Zhong et al.   Scientific Reports

Plant stem cell maintenance by transcriptional cross-regulation of related receptor kinases

(2015) Z. L. Nimchuk et al.   DEVELOPMENT

A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway

(2015) Mark A. Miller et al.   Evolutionary Bioinformatics

The Plant Genome Integrative Explorer Resource: PlantGenIE.org

(2015) David Sundell et al.   NEW PHYTOLOGIST

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

MicroProteins: small size – big impact

(2015) Tenai Eguen et al.   TRENDS IN PLANT SCIENCE

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A novel approach for multi-domain and multi-gene family identification provides insights into evolutionary dynamics of disease resistance genes in core eudicot plants

(2014) Johannes A Hofberger et al.   BMC GENOMICS

Analysis of peptide PSY1 responding transcripts in the two Arabidopsis plant lines: wild type and psy1r receptor mutant

(2014) Khalid Mahmood et al.   BMC GENOMICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Tomato Leucine-Rich Repeat Receptor-Like Kinases SlSERK3A and SlSERK3B Have Overlapping Functions in Bacterial and Nematode Innate Immunity

(2014) Hsuan-Chieh Peng et al.   PLoS One

Molecular evolution of the HD-ZIP I gene family in legume genomes

(2013) Zhen Li et al.   GENE

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Crystal structure of a plant leucine rich repeat protein with two island domains

(2013) Wen Song et al.   Science China-Life Sciences

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

The tomato RLK superfamily: phylogeny and functional predictions about the role of the LRRII-RLK subfamily in antiviral defense

(2012) Tetsu Sakamoto et al.   BMC PLANT BIOLOGY

Diversity, classification and function of the plant protein kinase superfamily

(2012) M. D. Lehti-Shiu et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genetic Evidence for an Indispensable Role of Somatic Embryogenesis Receptor Kinases in Brassinosteroid Signaling

(2012) Xiaoping Gou et al.   PLoS Genetics

Programmed cell death in the plant immune system

(2011) N S Coll et al.   CELL DEATH AND DIFFERENTIATION

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Identification, Characterization and Phylogenetic Analysis of the Rice LRR-Kinases

(2011) Xinli Sun et al.   PLoS One

Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism

(2011) Pil Joon Seo et al.   Nature Communications

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Plants versus pathogens: an evolutionary arms race

(2010) Jonathan P. Anderson et al.   FUNCTIONAL PLANT BIOLOGY

CLAVATA2 forms a distinct CLE-binding receptor complex regulating Arabidopsis stem cell specification

(2010) Yongfeng Guo et al.   PLANT JOURNAL

Gene duplication and evolutionary novelty in plants

(2009) Lex E. Flagel et al.   NEW PHYTOLOGIST

Functional Analyses of the CLAVATA2-Like Proteins and Their Domains That Contribute to CLAVATA2 Specificity

(2009) G. Wang et al.   PLANT PHYSIOLOGY

Noisy: Identification of problematic columns in multiple sequence alignments

(2008) Andreas WM Dress et al.   Algorithms for Molecular Biology

Simultaneous Interaction ofArabidopsis thalianawithBradyrhizobiumSp. Strain ORS278 andPseudomonas syringaepv.tomatoDC3000 Leads to Complex Transcriptome Changes

(2008) Fabienne Cartieaux et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Global Analysis of Arabidopsis Gene Expression Uncovers a Complex Array of Changes Impacting Pathogen Response and Cell Cycle during Geminivirus Infection

(2008) J. T. Ascencio-Ibanez et al.   PLANT PHYSIOLOGY

Arabidopsis CLV3 Peptide Directly Binds CLV1 Ectodomain

(2008) M. Ogawa et al.   SCIENCE