Internal state dynamics shape brainwide activity and foraging behaviour

Using DeepLabCut for 3D markerless pose estimation across species and behaviors

(2019) Tanmay Nath et al.   Nature Protocols

Structure of the Zebrafish Locomotor Repertoire Revealed with Unsupervised Behavioral Clustering

(2018) João C. Marques et al.   CURRENT BIOLOGY

Basal forebrain contributes to default mode network regulation

(2018) Jayakrishnan Nair et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Activation of serotonin neurons promotes active persistence in a probabilistic foraging task

(2018) Eran Lottem et al.   Nature Communications

DeepLabCut: markerless pose estimation of user-defined body parts with deep learning

(2018) Alexander Mathis et al.   NATURE NEUROSCIENCE

Clusterdv: a simple density-based clustering method that is robust, general and automatic

(2018) João C Marques et al.   BIOINFORMATICS

Pan-neuronal calcium imaging with cellular resolution in freely swimming zebrafish

(2017) Dal Hyung Kim et al.   NATURE METHODS

High-precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization

(2017) Gregory D. Marquart et al.   GigaScience

Feeding State Modulates Behavioral Choice and Processing of Prey Stimuli in the Zebrafish Tectum

(2016) Alessandro Filosa et al.   NEURON

Visuomotor Transformations Underlying Hunting Behavior in Zebrafish

(2015) Isaac H. Bianco et al.   CURRENT BIOLOGY

Whole-brain activity mapping onto a zebrafish brain atlas

(2015) Owen Randlett et al.   NATURE METHODS

Mapping brain activity at scale with cluster computing

(2014) Jeremy Freeman et al.   NATURE METHODS

Serotonin and the Neuropeptide PDF Initiate and Extend Opposing Behavioral States in C. elegans

(2013) Steven W. Flavell et al.   CELL

Cholinergic left-right asymmetry in the habenulo-interpeduncular pathway

(2013) E. Hong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How to set the switches on this thing

(2012) Peter Dayan   CURRENT OPINION IN NEUROBIOLOGY

Identification of the Zebrafish Ventral Habenula As a Homolog of the Mammalian Lateral Habenula

(2010) R. Amo et al.   JOURNAL OF NEUROSCIENCE

Olfactory pattern classification by discrete neuronal network states

(2010) Jörn Niessing et al.   NATURE

The comparative neuroanatomy and neurochemistry of zebrafish CNS systems of relevance to human neuropsychiatric diseases

(2010) P. Panula et al.   NEUROBIOLOGY OF DISEASE

Genetic dissection of dopaminergic and noradrenergic contributions to catecholaminergic tracts in early larval zebrafish

(2009) Edda Kastenhuber et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Axonal projections originating from raphe serotonergic neurons in the developing and adult zebrafish,Danio rerio, using transgenics to visualize raphe-specificpet1expression

(2008) Christina Lillesaar et al.   JOURNAL OF COMPARATIVE NEUROLOGY

The habenular nuclei: a conserved asymmetric relay station in the vertebrate brain

(2008) I. H Bianco et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES