Review of Three-Dimensional Liquid Chromatography Platforms for Bottom-Up Proteomics
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Review of Three-Dimensional Liquid Chromatography Platforms for Bottom-Up Proteomics
Authors
Keywords
-
Journal
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
Volume 21, Issue 4, Pages 1524
Publisher
MDPI AG
Online
2020-02-24
DOI
10.3390/ijms21041524
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Proteogenomic Characterization of Human Early-Onset Gastric Cancer
- (2019) Dong-Gi Mun et al. CANCER CELL
- Proteomic Analysis of the Breast Cancer Brain Metastasis Microenvironment
- (2019) Priyakshi Kalita-de Croft et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Automated Nanoflow Two-Dimensional Reversed-Phase Liquid Chromatography System Enables In-Depth Proteome and Phosphoproteome Profiling of Nanoscale Samples
- (2019) Maowei Dou et al. ANALYTICAL CHEMISTRY
- Proteomic Techniques to Examine Neuronal Translational Dynamics
- (2019) Shon A. Koren et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Proteomic Biomarkers of Retinal Inflammation in Diabetic Retinopathy
- (2019) Hannah Youngblood et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Optimization of Data-Independent Acquisition Mass Spectrometry for Deep and Highly Sensitive Proteomic Analysis
- (2019) Yusuke Kawashima et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Strong cation exchange-reversed phase liquid chromatography-capillary zone electrophoresis-tandem mass spectrometry platform with high peak capacity for deep bottom-up proteomics
- (2018) Daoyang Chen et al. ANALYTICA CHIMICA ACTA
- Two-dimensional separation using high-pH and low-pH reversed phase liquid chromatography for top-down proteomics
- (2018) Zhe Wang et al. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY
- Online comprehensive two-dimensional hydrophilic interaction chromatography × reversed-phase liquid chromatography coupled with hybrid linear ion trap Orbitrap mass spectrometry for the analysis of phenolic acids in Salvia miltiorrhiza
- (2018) Ji-Liang Cao et al. JOURNAL OF CHROMATOGRAPHY A
- Mixed-mode ion exchange-based integrated proteomics technology for fast and deep plasma proteome profiling
- (2018) Lu Xue et al. JOURNAL OF CHROMATOGRAPHY A
- Low-energy collision-induced dissociation (low-energy CID), collision-induced dissociation (CID), and higher energy collision dissociation (HCD) mass spectrometry for structural elucidation of saccharides and clarification of their dissolution mechanism i
- (2018) Parisa Bayat et al. JOURNAL OF MASS SPECTROMETRY
- Nanowell-Mediated Two-Dimensional Liquid Chromatography Enables Deep Proteome Profiling of
- (2018) Maowei Dou et al. Chemical Science
- Recent Advances in Multidimensional Separation for Proteome Analysis
- (2018) Huiming Yuan et al. ANALYTICAL CHEMISTRY
- Online Parallel Accumulation–Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer
- (2018) Florian Meier et al. MOLECULAR & CELLULAR PROTEOMICS
- 3D-SISPROT: A simple and integrated spintip-based protein digestion and three-dimensional peptide fractionation technology for deep proteome profiling
- (2017) Wendong Chen et al. JOURNAL OF CHROMATOGRAPHY A
- Acid/Salt/pH Gradient Improved Resolution and Sensitivity in Proteomics Study Using 2D SCX-RP LC–MS
- (2017) Ming-Zhi Zhu et al. JOURNAL OF PROTEOME RESEARCH
- Quantitative, multiplexed workflow for deep analysis of human blood plasma and biomarker discovery by mass spectrometry
- (2017) Hasmik Keshishian et al. Nature Protocols
- SWATH-MS as a tool for biomarker discovery: From basic research to clinical applications
- (2017) Sandra Isabel Anjo et al. PROTEOMICS
- An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes
- (2017) Dorte B. Bekker-Jensen et al. Cell Systems
- A comprehensive analysis and annotation of human normal urinary proteome
- (2017) Mindi Zhao et al. Scientific Reports
- 3D HPLC-MS with Reversed-Phase Separation Functionality in All Three Dimensions for Large-Scale Bottom-Up Proteomics and Peptide Retention Data Collection
- (2016) Vic Spicer et al. ANALYTICAL CHEMISTRY
- Efficient Exploitation of Separation Space in Two-Dimensional Liquid Chromatography System for Comprehensive and Efficient Proteomic Analyses
- (2016) Hangyeore Lee et al. ANALYTICAL CHEMISTRY
- Simple and Integrated Spintip-Based Technology Applied for Deep Proteome Profiling
- (2016) Wendong Chen et al. ANALYTICAL CHEMISTRY
- Improved Proteome and Phosphoproteome Analysis on a Cation Exchanger by a Combined Acid and Salt Gradient
- (2016) Jun Adachi et al. ANALYTICAL CHEMISTRY
- Mass Spectrometry Applied to Bottom-Up Proteomics: Entering the High-Throughput Era for Hypothesis Testing
- (2016) Ludovic C. Gillet et al. Annual Review of Analytical Chemistry
- Progress in Top-Down Proteomics and the Analysis of Proteoforms
- (2016) Timothy K. Toby et al. Annual Review of Analytical Chemistry
- Thousand and one ways to quantify and compare protein abundances in label-free bottom-up proteomics
- (2016) Mélisande Blein-Nicolas et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Top-down Proteomics: Technology Advancements and Applications to Heart Diseases
- (2016) Wenxuan Cai et al. Expert Review of Proteomics
- A versatile reversed phase-strong cation exchange-reversed phase (RP–SCX–RP) multidimensional liquid chromatography platform for qualitative and quantitative shotgun proteomics
- (2015) Henry C. H. Law et al. ANALYST
- Two dimensional separations of human urinary protein digest using a droplet-interfaced platform
- (2015) Linquan Ye et al. ANALYTICA CHIMICA ACTA
- Bottom-Up Proteomics (2013–2015): Keeping up in the Era of Systems Biology
- (2015) Janice Mayne et al. ANALYTICAL CHEMISTRY
- Comprehensive Two-Dimensional Liquid Chromatography with Stationary-Phase-Assisted Modulation Coupled to High-Resolution Mass Spectrometry Applied to Proteome Analysis of Saccharomyces cerevisiae
- (2015) Rudy J. Vonk et al. ANALYTICAL CHEMISTRY
- Multidimensional electrostatic repulsion–hydrophilic interaction chromatography (ERLIC) for quantitative analysis of the proteome and phosphoproteome in clinical and biomedical research
- (2015) Stefan Loroch et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- An off-line high pH reversed-phase fractionation and nano-liquid chromatography–mass spectrometry method for global proteomic profiling of cell lines
- (2015) Hang Wang et al. JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES
- Advancing Urinary Protein Biomarker Discovery by Data-Independent Acquisition on a Quadrupole-Orbitrap Mass Spectrometer
- (2015) Jan Muntel et al. JOURNAL OF PROTEOME RESEARCH
- Proteomic responses to a methyl viologen-induced oxidative stress in the wild type and FerB mutant strains of Paracoccus denitrificans
- (2015) Vendula Pernikářová et al. Journal of Proteomics
- Multidimensional proteomics for cell biology
- (2015) Mark Larance et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Large-Scale Proteome Quantification of Hepatocellular Carcinoma Tissues by a Three-Dimensional Liquid Chromatography Strategy Integrated with Sample Preparation
- (2014) Bo Xu et al. JOURNAL OF PROTEOME RESEARCH
- Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
- (2014) Nils A Kulak et al. NATURE METHODS
- The human embryonic stem cell proteome revealed by multidimensional fractionation followed by tandem mass spectrometry
- (2014) Peng Zhao et al. PROTEOMICS
- Top-down proteomics in health and disease: Challenges and opportunities
- (2014) Zachery R. Gregorich et al. PROTEOMICS
- SCX charge state selective separation of tryptic peptides combined with 2D-RP-HPLC allows for detailed proteome mapping
- (2013) Lázaro H. Betancourt et al. Journal of Proteomics
- Multidimensional separation of tryptic peptides from human serum proteins using reversed-phase, strong cation exchange, weak anion exchange, and fused-core fluorinated stationary phases
- (2013) Alexander P. Boichenko et al. JOURNAL OF SEPARATION SCIENCE
- Genome-scale proteome quantification by DEEP SEQ mass spectrometry
- (2013) Feng Zhou et al. Nature Communications
- High confidence and sensitivity four-dimensional fractionation for human plasma proteome analysis
- (2012) Renato Millioni et al. AMINO ACIDS
- Recent advances on multidimensional liquid chromatography–mass spectrometry for proteomics: From qualitative to quantitative analysis—A review
- (2012) Qi Wu et al. ANALYTICA CHIMICA ACTA
- Toward a Comprehensive Characterization of a Human Cancer Cell Phosphoproteome
- (2012) Houjiang Zhou et al. JOURNAL OF PROTEOME RESEARCH
- Recent advances in peptide separation by multidimensional liquid chromatography for proteome analysis
- (2012) Serena Di Palma et al. Journal of Proteomics
- Online Nanoflow Reversed Phase-Strong Anion Exchange-Reversed Phase Liquid Chromatography–Tandem Mass Spectrometry Platform for Efficient and In-Depth Proteome Sequence Analysis of Complex Organisms
- (2011) Feng Zhou et al. ANALYTICAL CHEMISTRY
- Improvement of the Quantification Accuracy and Throughput for Phosphoproteome Analysis by a Pseudo Triplex Stable Isotope Dimethyl Labeling Approach
- (2011) Chunxia Song et al. ANALYTICAL CHEMISTRY
- Online Comprehensive RPLC × RPLC with Mass Spectrometry Detection for the Analysis of Proteome Samples
- (2011) Paola Donato et al. ANALYTICAL CHEMISTRY
- Performance Characteristics of a New Hybrid Quadrupole Time-of-Flight Tandem Mass Spectrometer (TripleTOF 5600)
- (2011) Genna L. Andrews et al. ANALYTICAL CHEMISTRY
- Zwitterionic Hydrophilic Interaction Liquid Chromatography (ZIC-HILIC and ZIC-cHILIC) Provide High Resolution Separation and Increase Sensitivity in Proteome Analysis
- (2011) Serena Di Palma et al. ANALYTICAL CHEMISTRY
- Highly Sensitive Proteome Analysis of FACS-Sorted Adult Colon Stem Cells
- (2011) Serena Di Palma et al. JOURNAL OF PROTEOME RESEARCH
- Online Nanoflow Multidimensional Fractionation for High Efficiency Phosphopeptide Analysis
- (2011) Scott B. Ficarro et al. MOLECULAR & CELLULAR PROTEOMICS
- High Abundance Proteins Depletion vs Low Abundance Proteins Enrichment: Comparison of Methods to Reduce the Plasma Proteome Complexity
- (2011) Renato Millioni et al. PLoS One
- A new versatile peptide-based size exclusion chromatography platform for global profiling and quantitation of candidate biomarkers in hepatocellular carcinoma specimens
- (2011) Hyoung-Joo Lee et al. PROTEOMICS
- Novel liquid-chromatography columns for proteomics research
- (2011) Michiel H.M. van de Meent et al. TRAC-TRENDS IN ANALYTICAL CHEMISTRY
- Multi-dimensional liquid chromatography in proteomics—A review
- (2010) Xiang Zhang et al. ANALYTICA CHIMICA ACTA
- Recent advances in micro-scale and nano-scale high-performance liquid-phase chromatography for proteome research
- (2010) Dingyin Tao et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- Comprehensive Study on the Optimization of Online Two-Dimensional Liquid Chromatographic Systems Considering Losses in Theoretical Peak Capacity in First- and Second-Dimensions: A Pareto-Optimality Approach
- (2010) G. Vivó-Truyols et al. ANALYTICAL CHEMISTRY
- A Fully Automated System with Online Sample Loading, Isotope Dimethyl Labeling and Multidimensional Separation for High-Throughput Quantitative Proteome Analysis
- (2010) Fangjun Wang et al. ANALYTICAL CHEMISTRY
- A Novel Multidimensional Protein Identification Technology Approach Combining Protein Size Exclusion Prefractionation, Peptide Zwitterion−Ion Hydrophilic Interaction Chromatography, and Nano-Ultraperformance RP Chromatography/nESI-MS2for the in-Depth Analysis of the Serum Proteome and Phosphoproteome: Application to Clinical Sera Derived from Humans with Benign Prostate Hyperplasia
- (2010) Spiros D. Garbis et al. ANALYTICAL CHEMISTRY
- Coupling liquid chromatography to Orbitrap mass spectrometry
- (2010) Alexander Makarov et al. JOURNAL OF CHROMATOGRAPHY A
- Development of a Highly Efficient 2-D System with a Serially Coupled Long Column and Its Application in Identification of Rat Brain Integral Membrane Proteins with Ionic Liquids-Assisted Solubilization and Digestion
- (2010) Dingyin Tao et al. JOURNAL OF PROTEOME RESEARCH
- Multidimensional chromatography coupled to mass spectrometry in analysing complex proteomics samples
- (2010) Péter Horvatovich et al. JOURNAL OF SEPARATION SCIENCE
- Reversed-Phase-Reversed-Phase Liquid Chromatography Approach with High Orthogonality for Multidimensional Separation of Phosphopeptides
- (2009) Chunxia Song et al. ANALYTICAL CHEMISTRY
- Recent advances in on-line multidimensional liquid chromatography
- (2009) Helle Malerod et al. Analytical Methods
- Proteomics by Mass Spectrometry: Approaches, Advances, and Applications
- (2009) John R. Yates et al. Annual Review of Biomedical Engineering
- A Dynamic Range Compression and Three-Dimensional Peptide Fractionation Analysis Platform Expands Proteome Coverage and the Diagnostic Potential of Whole Saliva
- (2009) Sricharan Bandhakavi et al. JOURNAL OF PROTEOME RESEARCH
- Analysis of low-abundance proteins using the proteomic reactor with pH fractionation
- (2009) Hu Zhou et al. TALANTA
- Multidimensional LC Separations in Shotgun Proteomics
- (2008) Akira Motoyama et al. ANALYTICAL CHEMISTRY
- Equation for Peak Capacity Estimation in Two-Dimensional Liquid Chromatography
- (2008) Xiaoping Li et al. ANALYTICAL CHEMISTRY
- Implementations of two-dimensional liquid chromatography
- (2008) Georges Guiochon et al. JOURNAL OF CHROMATOGRAPHY A
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started