Expression profiling of budding cells in colorectal cancer reveals an EMT-like phenotype and molecular subtype switching

The histone variant H2A.X is a regulator of the epithelial–mesenchymal transition

(2016) Urbain Weyemi et al.   Nature Communications

Molecular profiling of tumour budding implicates TGFβ-mediated epithelial-mesenchymal transition as a therapeutic target in oral squamous cell carcinoma

(2015) DH Jensen et al.   JOURNAL OF PATHOLOGY

RUNX2 and the PI3K/AKT axis reciprocal activation as a driving force for tumor progression

(2015) Karine A. Cohen-Solal et al.   Molecular Cancer

Stromal contribution to the colorectal cancer transcriptome

(2015) Claudio Isella et al.   NATURE GENETICS

The consensus molecular subtypes of colorectal cancer

(2015) Justin Guinney et al.   NATURE MEDICINE

Genomic landscape of carcinogen-induced and genetically induced mouse skin squamous cell carcinoma

(2015) Dany Nassar et al.   NATURE MEDICINE

i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly

(2015) Hana Imrichová et al.   NUCLEIC ACIDS RESEARCH

Epithelial mesenchymal transition and tumor budding in aggressive colorectal cancer: Tumor budding as oncotarget

(2015)   Oncotarget

Prognostic and diagnostic value of epithelial to mesenchymal transition markers in pulmonary neuroendocrine tumors

(2014) Jose A Galván et al.   BMC CANCER

Epithelial-mesenchymal transition spectrum quantification and its efficacy in deciphering survival and drug responses of cancer patients

(2014) T. Z. Tan et al.   EMBO Molecular Medicine

Molecular mechanisms of epithelial–mesenchymal transition

(2014) Samy Lamouille et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Tumor Budding is an Independent Predictor of Outcome in AJCC/UICC Stage II Colorectal Cancer

(2012) Johannes Betge et al.   ANNALS OF SURGICAL ONCOLOGY

Tumour budding: a promising parameter in colorectal cancer

(2012) A Lugli et al.   BRITISH JOURNAL OF CANCER

Tumor budding score based on 10 high-power fields is a promising basis for a standardized prognostic scoring system in stage II colorectal cancer

(2012) Milo Horcic et al.   HUMAN PATHOLOGY

Proposal for a 10-high-power-fields scoring method for the assessment of tumor budding in colorectal cancer

(2012) Eva Karamitopoulou et al.   MODERN PATHOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules

(2012) Carl Herrmann et al.   NUCLEIC ACIDS RESEARCH

Epithelial mesenchymal transition in colorectal cancer: Seminal role in promoting disease progression and resistance to neoadjuvant therapy

(2012) Aneel Bhangu et al.   SURGICAL ONCOLOGY-OXFORD

GC-Content Normalization for RNA-Seq Data

(2011) Davide Risso et al.   BMC BIOINFORMATICS

Aggressive colorectal carcinoma phenotypes of invasion can be assessed reproducibly and effectively predict poor survival: interobserver study and multivariate survival analysis of a prospectively collected series of 299 patients after potentially curativ

(2011) Michael Wöhlke et al.   HISTOPATHOLOGY

Immunohistochemical expression profile of β-catenin, E-cadherin, P-cadherin, laminin-5γ2 chain, and SMAD4 in colorectal serrated adenocarcinoma

(2011) José García-Solano et al.   HUMAN PATHOLOGY

The American Joint Committee on Cancer: the 7th Edition of the AJCC Cancer Staging Manual and the Future of TNM

(2010) Stephen B. Edge et al.   ANNALS OF SURGICAL ONCOLOGY

Loss of FOXA1/2 Is Essential for the Epithelial-to-Mesenchymal Transition in Pancreatic Cancer

(2010) Y. Song et al.   CANCER RESEARCH

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Invasion associated up-regulation of nuclear factor κB target genes in colorectal cancer

(2009) David Horst et al.   CANCER

TGF-β-induced epithelial to mesenchymal transition

(2009) Jian Xu et al.   CELL RESEARCH

Tumor Budding as an Index to Identify High-Risk Patients with Stage II Colon Cancer

(2008) Takatoshi Nakamura et al.   DISEASES OF THE COLON & RECTUM