Selective Inbreeding: Genetic Crosses Drive Apparent Adaptive Mutation in the Cairns-Foster System of Escherichia coli

Bacteria-to-Human Protein Networks Reveal Origins of Endogenous DNA Damage

(2019) Jun Xia et al.   CELL

The high prevalence of antibiotic heteroresistance in pathogenic bacteria is mainly caused by gene amplification

(2019) Hervé Nicoloff et al.   Nature Microbiology

DNA Re-replication Is Susceptible to Nucleotide Level Mutagenesis

(2019) Duyen T. Bui et al.   GENETICS

Molecular mechanisms of adaptive evolution revealed by global selection for glyphosate resistance

(2019) Todd A. Gaines et al.   NEW PHYTOLOGIST

What is mutation? A chapter in the series: How microbes “jeopardize” the modern synthesis

(2019) Devon M. Fitzgerald et al.   PLoS Genetics

Selection-Enhanced Mutagenesis oflacGenes Is Due to Their Coamplification withdinBEncoding an Error-Prone DNA Polymerase

(2018) Itsugo Yamayoshi et al.   GENETICS

Adaptation by copy number variation in monopartite viruses

(2018) Avraham Bayer et al.   Current Opinion in Virology

Death and population dynamics affect mutation rate estimates and evolvability under stress in bacteria

(2018) Antoine Frenoy et al.   PLOS BIOLOGY

Selection-Enhanced Mutagenesis oflacGenes Is Due to Their Coamplification withdinBEncoding an Error-Prone DNA Polymerase

(2018) Itsugo Yamayoshi et al.   GENETICS

Eukaryotic DNA Polymerases in Homologous Recombination

(2016) Mitch McVey et al.   Annual Review of Genetics

Chromosomal Replication Complexity: A Novel DNA Metrics and Genome Instability Factor

(2016) Andrei Kuzminov   PLoS Genetics

Determinants of spontaneous mutation in the bacteriumEscherichia colias revealed by whole-genome sequencing

(2015) Patricia L. Foster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Origin of Mutants Under Selection: How Natural Selection Mimics Mutagenesis (Adaptive Mutation)

(2015) Sophie Maisnier-Patin et al.   Cold Spring Harbor Perspectives in Biology

Plasmid Copy Number Underlies Adaptive Mutability in Bacteria

(2014) E. Sano et al.   GENETICS

Break-induced replication: functions and molecular mechanism

(2013) Anna Malkova et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Copy number change: evolving views on gene amplification

(2013) Kathryn T Elliott et al.   Future Microbiology

Translesion DNA Synthesis and Mutagenesis in Prokaryotes

(2013) R. P. Fuchs et al.   Cold Spring Harbor Perspectives in Biology

Mutations Arising During Repair of Chromosome Breaks

(2012) Anna Malkova et al.   Annual Review of Genetics

Escherichia coli DinB inhibits replication fork progression without significantly inducing the SOS response

(2012) Tetsuya Mori et al.   GENES & GENETIC SYSTEMS

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

What Limits the Efficiency of Double-Strand Break-Dependent Stress-Induced Mutation in Escherichia coli?

(2012) Chandan Shee et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing

(2012) H. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Impact of a stress-inducible switch to mutagenic repair of DNA breaks on mutation in Escherichia coli

(2011) C. Shee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Tandem Inversion Duplication in Salmonella enterica: Selection Drives Unstable Precursors to Final Mutation Types

(2010) E. Kugelberg et al.   GENETICS

Biological roles of translesion synthesis DNA polymerases in eubacteria

(2010) Dan I. Andersson et al.   MOLECULAR MICROBIOLOGY

Loss of DNA Replication Control Is a Potent Inducer of Gene Amplification

(2010) B. M. Green et al.   SCIENCE

Gene Amplification and Adaptive Evolution in Bacteria

(2009) Dan I. Andersson et al.   Annual Review of Genetics

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase

(2009) C. Indiani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Microhomology-Mediated Break-Induced Replication Model for the Origin of Human Copy Number Variation

(2009) P. J. Hastings et al.   PLoS Genetics

Overproduction ofEscherichia coliDNA polymerase DinB (Pol IV) inhibits replication fork progression and is lethal

(2008) Kaori Uchida et al.   MOLECULAR MICROBIOLOGY