The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize

MaizeGDB update: new tools, data and interface for the maize model organism database

(2015) Carson M. Andorf et al.   NUCLEIC ACIDS RESEARCH

A computational platform to maintain and migrate manual functional annotations for BioCyc databases

(2014) Jesse R Walsh et al.   BMC Systems Biology

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

Ensembl 2015

(2014) Fiona Cunningham et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Genomic Signatures of Specialized Metabolism in Plants

(2014) L. Chae et al.   SCIENCE

A systematic comparison of the MetaCyc and KEGG pathway databases

(2013) Tomer Altman et al.   BMC BIOINFORMATICS

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

(2013) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Maize Metabolic Network Construction and Transcriptome Analysis

(2013) Marcela K. Monaco et al.   Plant Genome

MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases

(2012) Akhil Kumar et al.   BMC BIOINFORMATICS

Genes Identified by Visible Mutant Phenotypes Show Increased Bias toward One of Two Subgenomes of Maize

(2011) James C. Schnable et al.   PLoS One

PathwayAccess: CellDesigner plugins for pathway databases

(2010) J. L. Van Hemert et al.   BIOINFORMATICS

Creation of a Genome-Wide Metabolic Pathway Database for Populus trichocarpa Using a New Approach for Reconstruction and Curation of Metabolic Pathways for Plants

(2010) P. Zhang et al.   PLANT PHYSIOLOGY

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Genome-wide enzyme annotation with precision control: Catalytic families (CatFam) databases

(2008) Chenggang Yu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS