petal: Co-expression network modelling in R

exo-Brevicomin biosynthetic pathway enzymes from the Mountain Pine Beetle, Dendroctonus ponderosae

(2014) Minmin Song et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Multi-tissue Analysis of Co-expression Networks by Higher-Order Generalized Singular Value Decomposition Identifies Functionally Coherent Transcriptional Modules

(2014) Xiaolin Xiao et al.   PLoS Genetics

Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana

(2013) Federico M. Giorgi et al.   BIOINFORMATICS

Biostatistical approaches for the reconstruction of gene co-expression networks based on transcriptomic data

(2013) L. Lopez-Kleine et al.   Briefings in Functional Genomics

Reconstruction of an Integrated Genome-Scale Co-Expression Network Reveals Key Modules Involved in Lung Adenocarcinoma

(2013) Gholamreza Bidkhori et al.   PLoS One

Transcriptome and full-length cDNA resources for the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major insect pest of pine forests

(2012) Christopher I. Keeling et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

Comparative co-expression analysis in plant biology

(2012) SARA MOVAHEDI et al.   PLANT CELL AND ENVIRONMENT

Gene Coexpression Network Alignment and Conservation of Gene Modules between Two Grass Species: Maize and Rice

(2011) S. P. Ficklin et al.   PLANT PHYSIOLOGY

CoP: a database for characterizing co-expressed gene modules with biological information in plants

(2010) Y. Ogata et al.   BIOINFORMATICS

A formal analysis of cytokine networks in Chronic Fatigue Syndrome

(2010) Gordon Broderick et al.   BRAIN BEHAVIOR AND IMMUNITY

Co-expression networks: graph properties and topological comparisons

(2009) Ramon Xulvi-Brunet et al.   BIOINFORMATICS

Assembly of an Interactive Correlation Network for the Arabidopsis Genome Using a Novel Heuristic Clustering Algorithm

(2009) M. Mutwil et al.   PLANT PHYSIOLOGY

Scale-Free Networks: A Decade and Beyond

(2009) Albert-László Barabási   SCIENCE

Large-scale mRNA expression profiling in the common ice plant, Mesembryanthemum crystallinum, performing C3 photosynthesis and Crassulacean acid metabolism (CAM)

(2008) John C. Cushman et al.   JOURNAL OF EXPERIMENTAL BOTANY

Variations in DNA elucidate molecular networks that cause disease

(2008) Yanqing Chen et al.   NATURE

CressExpress: A Tool For Large-Scale Mining of Expression Data from Arabidopsis

(2008) V. Srinivasasainagendra et al.   PLANT PHYSIOLOGY

Geometric Interpretation of Gene Coexpression Network Analysis

(2008) Steve Horvath et al.   PLoS Computational Biology