- Home
- Publications
- Publication Search
- Publication Details
Title
3D genome organisation in Drosophila
Authors
Keywords
-
Journal
Briefings in Functional Genomics
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2019-10-02
DOI
10.1093/bfgp/elz029
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Condensin II Counteracts Cohesin and RNA Polymerase II in the Establishment of 3D Chromatin Organization
- (2019) M. Jordan Rowley et al. Cell Reports
- Visualizing DNA folding and RNA in embryos at single-cell resolution
- (2019) Leslie J. Mateo et al. NATURE
- Microscopy-Based Chromosome Conformation Capture Enables Simultaneous Visualization of Genome Organization and Transcription in Intact Organisms
- (2019) Andrés M. Cardozo Gizzi et al. MOLECULAR CELL
- Continued Activity of the Pioneer Factor Zelda Is Required to Drive Zygotic Genome Activation
- (2019) Stephen L. McDaniel et al. MOLECULAR CELL
- Chromatin architecture reorganization during neuronal cell differentiation in Drosophila genome
- (2019) Keerthi T. Chathoth et al. GENOME RESEARCH
- Polymer coil–globule phase transition is a universal folding principle of Drosophila epigenetic domains
- (2019) Antony Lesage et al. Epigenetics & Chromatin
- Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression
- (2019) Yad Ghavi-Helm et al. NATURE GENETICS
- Large distances separate coregulated genes in living Drosophila embryos
- (2019) Tyler Heist et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Highly structured homolog pairing reflects functional organization of the Drosophila genome
- (2019) Jumana AlHaj Abed et al. Nature Communications
- The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos
- (2019) Jelena Erceg et al. Nature Communications
- The Insulator Protein CTCF Is Required for CorrectHoxGene Expression, but Not for Embryonic Development inDrosophila
- (2018) Maria Cristina Gambetta et al. GENETICS
- Visualization of Transvection in Living Drosophila Embryos
- (2018) Bomyi Lim et al. MOLECULAR CELL
- Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development
- (2018) Yuki Ogiyama et al. MOLECULAR CELL
- Epigenomics in 3D: importance of long-range spreading and specific interactions in epigenomic maintenance
- (2018) Daniel Jost et al. NUCLEIC ACIDS RESEARCH
- High-resolution TADs reveal DNA sequences underlying genome organization in flies
- (2018) Fidel Ramírez et al. Nature Communications
- Sub-kb Hi-C in D. melanogaster reveals conserved characteristics of TADs between insect and mammalian cells
- (2018) Qi Wang et al. Nature Communications
- How epigenome drives chromatin folding and dynamics, insights from efficient coarse-grained models of chromosomes
- (2018) Surya K. Ghosh et al. PLoS Computational Biology
- The Insulator Protein CTCF Is Required for CorrectHoxGene Expression, but Not for Embryonic Development inDrosophila
- (2018) Maria Cristina Gambetta et al. GENETICS
- TADs are 3D structural units of higher-order chromosome organization in Drosophila
- (2018) Quentin Szabo et al. Science Advances
- Evolutionary stability of topologically associating domains is associated with conserved gene regulation
- (2018) Jan Krefting et al. BMC BIOLOGY
- Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes
- (2018) Artem V. Luzhin et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- Dynamic interplay between enhancer–promoter topology and gene activity
- (2018) Hongtao Chen et al. NATURE GENETICS
- Nucleosome–nucleosome interactions via histone tails and linker DNA regulate nuclear rigidity
- (2017) Yuta Shimamoto et al. MOLECULAR BIOLOGY OF THE CELL
- Evolutionarily Conserved Principles Predict 3D Chromatin Organization
- (2017) M. Jordan Rowley et al. MOLECULAR CELL
- TAD-free analysis of architectural proteins and insulators
- (2017) Raphaël Mourad et al. NUCLEIC ACIDS RESEARCH
- Regions of very low H3K27me3 partition the Drosophila genome into topological domains
- (2017) Sherif El-Sharnouby et al. PLoS One
- Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map
- (2017) Kyle P. Eagen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Convergence of topological domain boundaries, insulators, and polytene interbands revealed by high-resolution mapping of chromatin contacts in the early Drosophila melanogaster embryo
- (2017) Michael R Stadler et al. eLife
- CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation
- (2016) Matthias Merkenschlager et al. Annual Review of Genomics and Human Genetics
- Super-resolution imaging reveals distinct chromatin folding for different epigenetic states
- (2016) Alistair N. Boettiger et al. NATURE
- Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture
- (2016) Caelin Cubeñas-Potts et al. NUCLEIC ACIDS RESEARCH
- Regulation of Genome Architecture and Function by Polycomb Proteins
- (2016) Marianne Entrevan et al. TRENDS IN CELL BIOLOGY
- Computational Identification of Genomic Features That Influence 3D Chromatin Domain Formation
- (2016) Raphaël Mourad et al. PLoS Computational Biology
- Effects of Gene Dose, Chromatin, and Network Topology on Expression in Drosophila melanogaster
- (2016) Hangnoh Lee et al. PLoS Genetics
- Distinct polymer physics principles govern chromatin dynamics in mouse and Drosophila topological domains
- (2015) Vuthy Ea et al. BMC GENOMICS
- Stable Chromosome Condensation Revealed by Chromosome Conformation Capture
- (2015) Kyle P. Eagen et al. CELL
- Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C
- (2015) Tsung-Han S. Hsieh et al. CELL
- Genetics on the Fly: A Primer on the Drosophila Model System
- (2015) K. G. Hales et al. GENETICS
- Genome-wide activities of Polycomb complexes control pervasive transcription
- (2015) Hun-Goo Lee et al. GENOME RESEARCH
- Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the earlyDrosophilaembryo
- (2015) Katharine N. Schulz et al. GENOME RESEARCH
- Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains
- (2015) Sergey V. Ulianov et al. GENOME RESEARCH
- Widespread Rearrangement of 3D Chromatin Organization Underlies Polycomb-Mediated Stress-Induced Silencing
- (2015) Li Li et al. MOLECULAR CELL
- Condensin-driven remodelling of X chromosome topology during dosage compensation
- (2015) Emily Crane et al. NATURE
- Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders
- (2015) Carlos Gómez-Marín et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Polycomb silencing: from linear chromatin domains to 3D chromosome folding
- (2014) Thierry Cheutin et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Comparative analysis of metazoan chromatin organization
- (2014) Joshua W. K. Ho et al. NATURE
- Enhancer loops appear stable during development and are associated with paused polymerase
- (2014) Yad Ghavi-Helm et al. NATURE
- Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe
- (2014) Takeshi Mizuguchi et al. NATURE
- Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains
- (2014) Daniel Jost et al. NUCLEIC ACIDS RESEARCH
- Genetic Organization of Interphase Chromosome Bands and Interbands in Drosophila melanogaster
- (2014) Igor F. Zhimulev et al. PLoS One
- Insulator function and topological domain border strength scale with architectural protein occupancy
- (2014) Kevin Van Bortle et al. GENOME BIOLOGY
- Chromatin insulators and long-distance interactions inDrosophila
- (2013) Olga Kyrchanova et al. FEBS LETTERS
- The Nucleoplasmin Homolog NLP Mediates Centromere Clustering and Anchoring to the Nucleolus
- (2013) Jan Padeken et al. MOLECULAR CELL
- Cohesin and Polycomb Proteins Functionally Interact to Control Transcription at Silenced and Active Genes
- (2013) Cheri A. Schaaf et al. PLoS Genetics
- Genome-Wide Control of RNA Polymerase II Activity by Cohesin
- (2013) Cheri A. Schaaf et al. PLoS Genetics
- Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
- (2012) Tom Sexton et al. CELL
- Nature and function of insulator protein binding sites in the Drosophila genome
- (2012) Y. B. Schwartz et al. GENOME RESEARCH
- Df31 Protein and snoRNAs Maintain Accessible Higher-Order Structures of Chromatin
- (2012) Thomas Schubert et al. MOLECULAR CELL
- Gene Density, Transcription, and Insulators Contribute to the Partition of the Drosophila Genome into Physical Domains
- (2012) Chunhui Hou et al. MOLECULAR CELL
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- Cohesin Selectively Binds and Regulates Genes with Paused RNA Polymerase
- (2011) Avery Fay et al. CURRENT BIOLOGY
- The Chriz–Z4 complex recruits JIL-1 to polytene chromosomes,a requirement for interband-specific phosphorylation of H3S10
- (2011) Miao Gan et al. JOURNAL OF BIOSCIENCES
- Interactions among Polycomb Domains Are Guided by Chromosome Architecture
- (2011) Bas Tolhuis et al. PLoS Genetics
- Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells
- (2010) Guillaume J. Filion et al. CELL
- Chromosome Territories
- (2010) T. Cremer et al. Cold Spring Harbor Perspectives in Biology
- Neighbourhood Continuity Is Not Required for Correct Testis Gene Expression in Drosophila
- (2010) Lisa A. Meadows et al. PLOS BIOLOGY
- A Comprehensive Map of Insulator Elements for the Drosophila Genome
- (2010) Nicolas Nègre et al. PLoS Genetics
- Active promoters and insulators are marked by the centrosomal protein 190
- (2009) Marek Bartkuhn et al. EMBO JOURNAL
- Enhancer-Promoter Communication Is Regulated by Insulator Pairing in a Drosophila Model Bigenic Locus
- (2008) O. Maksimenko et al. MOLECULAR AND CELLULAR BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search