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A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

(2014) Suhas S.P. Rao et al.   CELL

Unraveling architecture of the pluripotent genome

(2014) Jennifer E Phillips-Cremins   CURRENT OPINION IN CELL BIOLOGY

Obesity-associated variants within FTO form long-range functional connections with IRX3

(2014) Scott Smemo et al.   NATURE

Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes

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Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment

(2014) Jim R Hughes et al.   NATURE GENETICS

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Deep conservation of wrist and digit enhancers in fish

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Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci

(2014) Daan Noordermeer et al.   eLife

Characterization of constitutive CTCF/cohesin loci: a possible role in establishing topological domains in mammalian genomes

(2013) Yuanyuan Li et al.   BMC GENOMICS

Modification of Enhancer Chromatin: What, How, and Why?

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Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

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A high-resolution map of the three-dimensional chromatin interactome in human cells

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A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs

(2013) G. Andrey et al.   SCIENCE

Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome

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Diversification of oral and aboral mesodermal regulatory states in pregastrular sea urchin embryos

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Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints

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Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: From fixation to computation

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An integrated encyclopedia of DNA elements in the human genome

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(2012) Jesse R. Dixon et al.   NATURE

Spatial partitioning of the regulatory landscape of the X-inactivation centre

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Landscapes and archipelagos: spatial organization of gene regulation in vertebrates

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Rapid BAC selection for tol2-mediated transgenesis in zebrafish

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The evolution of nervous system patterning: insights from sea urchin development

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The Dynamic Architecture of Hox Gene Clusters

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Six3 demarcates the anterior-most developing brain region in bilaterian animals

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The sea urchin animal pole domain is a Six3-dependent neurogenic patterning center

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Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

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