What’s the target: understanding two decades of in silico microRNA-target prediction
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Title
What’s the target: understanding two decades of in silico microRNA-target prediction
Authors
Keywords
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Journal
BRIEFINGS IN BIOINFORMATICS
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2019-09-05
DOI
10.1093/bib/bbz111
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Related references
Note: Only part of the references are listed.- miRNA Targeting: Growing beyond the Seed
- (2019) Laura B. Chipman et al. TRENDS IN GENETICS
- Single-cell microRNA-mRNA co-sequencing reveals non-genetic heterogeneity and mechanisms of microRNA regulation
- (2019) Nayi Wang et al. Nature Communications
- An estimate of the total number of true human miRNAs
- (2019) Julia Alles et al. NUCLEIC ACIDS RESEARCH
- Too Many False Targets for MicroRNAs: Challenges and Pitfalls in Prediction of miRNA Targets and Their Gene Ontology in Model and Non‐model Organisms
- (2019) Arie Fridrich et al. BIOESSAYS
- Deep learning: new computational modelling techniques for genomics
- (2019) Gökcen Eraslan et al. NATURE REVIEWS GENETICS
- The sncRNA Zoo: a repository for circulating small noncoding RNAs in animals
- (2019) Tobias Fehlmann et al. NUCLEIC ACIDS RESEARCH
- SeedVicious: Analysis of microRNA target and near-target sites
- (2018) Antonio Marco PLoS One
- Genome-wide microRNA screening in Nile tilapia reveals pervasive isomiRs’ transcription, sex-biased arm switching and increasing complexity of expression throughout development
- (2018) Danillo Pinhal et al. Scientific Reports
- miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts
- (2018) Albert Pla et al. PLoS Computational Biology
- Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows
- (2018) Nidhi Shah et al. BIOINFORMATICS
- High-performance medicine: the convergence of human and artificial intelligence
- (2018) Eric J. Topol NATURE MEDICINE
- New approach for understanding genome variations in KEGG
- (2018) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- GENCODE reference annotation for the human and mouse genomes
- (2018) Adam Frankish et al. NUCLEIC ACIDS RESEARCH
- The Gene Ontology Resource: 20 years and still GOing strong
- (2018) NUCLEIC ACIDS RESEARCH
- miRBase: from microRNA sequences to function
- (2018) Ana Kozomara et al. NUCLEIC ACIDS RESEARCH
- Ensembl 2018
- (2017) Daniel R Zerbino et al. NUCLEIC ACIDS RESEARCH
- mirDIP 4.1—integrative database of human microRNA target predictions
- (2017) Tomas Tokar et al. NUCLEIC ACIDS RESEARCH
- IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions
- (2017) Martin Mann et al. NUCLEIC ACIDS RESEARCH
- miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions
- (2017) Chih-Hung Chou et al. NUCLEIC ACIDS RESEARCH
- DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions
- (2017) Dimitra Karagkouni et al. NUCLEIC ACIDS RESEARCH
- Combining Results from Distinct MicroRNA Target Prediction Tools Enhances the Performance of Analyses
- (2017) Arthur C. Oliveira et al. Frontiers in Genetics
- TarPmiR: a new approach for microRNA target site prediction
- (2016) Jun Ding et al. BIOINFORMATICS
- microRNA target prediction programs predict many false positives
- (2016) Natalia Pinzón et al. GENOME RESEARCH
- miRPathDB: a new dictionary on microRNAs and target pathways
- (2016) Christina Backes et al. NUCLEIC ACIDS RESEARCH
- Prediction of human miRNA target genes using computationally reconstructed ancestral mammalian sequences
- (2016) Mickael Leclercq et al. NUCLEIC ACIDS RESEARCH
- miRepress: modelling gene expression regulation by microRNA with non-conventional binding sites
- (2016) Suman Ghosal et al. Scientific Reports
- A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
- (2015) Bastian Fromm et al. Annual Review of Genetics
- Integrating full spectrum of sequence features into predicting functional microRNA–mRNA interactions
- (2015) Zixing Wang et al. BIOINFORMATICS
- dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
- (2015) Tal Galili BIOINFORMATICS
- SubmiRine: assessing variants in microRNA targets using clinical genomic data sets
- (2015) Evan K. Maxwell et al. NUCLEIC ACIDS RESEARCH
- DIANA-miRPath v3.0: deciphering microRNA function with experimental support
- (2015) Ioannis S. Vlachos et al. NUCLEIC ACIDS RESEARCH
- Caenorhabditis elegansALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal
- (2015) Anna Y. Zinovyeva et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Predicting effective microRNA target sites in mammalian mRNAs
- (2015) Vikram Agarwal et al. eLife
- circlize implements and enhances circular visualization in R
- (2014) Zuguang Gu et al. BIOINFORMATICS
- High-throughput characterization of protein-RNA interactions
- (2014) K. B. Cook et al. Briefings in Functional Genomics
- Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks
- (2014) Hua-Sheng Chiu et al. GENOME RESEARCH
- A probabilistic approach to explore human miRNA targetome by integrating miRNA-overexpression data and sequence information
- (2013) Yue Li et al. BIOINFORMATICS
- Searching the coding region for microRNA targets
- (2013) R. M. Marin et al. RNA
- Functional microRNA targets in protein coding sequences
- (2012) Martin Reczko et al. BIOINFORMATICS
- Identification of microRNA-regulated gene networks by expression analysis of target genes
- (2012) Vincenzo Alessandro Gennarino et al. GENOME RESEARCH
- HomoTarget: A new algorithm for prediction of microRNA targets in Homo sapiens
- (2012) Hamed Ahmadi et al. GENOMICS
- Accurate microRNA Target Prediction Using Detailed Binding Site Accessibility and Machine Learning on Proteomics Data
- (2012) Martin Reczko et al. Frontiers in Genetics
- One Decade of Development and Evolution of MicroRNA Target Prediction Algorithms
- (2012) Paula H. Reyes∼Herrera et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
- (2011) Hanbo Chen et al. BMC BIOINFORMATICS
- miRTar: an integrated system for identifying miRNA-target interactions in human
- (2011) Justin Hsu et al. BMC BIOINFORMATICS
- myMIR: a genome-wide microRNA targets identification and annotation tool
- (2011) D. Corrada et al. BRIEFINGS IN BIOINFORMATICS
- Conserved microRNA targeting in Drosophila is as widespread in coding regions as in 3'UTRs
- (2010) M. Schnall-Levin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
- (2010) Doron Betel et al. GENOME BIOLOGY
- Origin, Biogenesis, and Activity of Plant MicroRNAs
- (2009) Olivier Voinnet CELL
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- (2009) Christine Mayr et al. CELL
- New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites
- (2009) I. Lee et al. GENOME RESEARCH
- Predicting microRNA targets and functions: traps for the unwary
- (2009) William Ritchie et al. NATURE METHODS
- MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression
- (2009) Seungyoon Nam et al. NUCLEIC ACIDS RESEARCH
- Most mammalian mRNAs are conserved targets of microRNAs
- (2008) R. C. Friedman et al. GENOME RESEARCH
- mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein–enriched transcripts
- (2008) Molly Hammell et al. NATURE METHODS
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