Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

A transcriptomic atlas of mammalian olfactory mucosae reveals an evolutionary influence on food odor detection in humans

(2019) Luis R. Saraiva et al.   Science Advances

Alternative polyadenylation produces multiple 3’ untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons

(2019) Mohamed Doulazmi et al.   BMC GENOMICS

Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci

(2018) Jingtao Lilue et al.   NATURE GENETICS

GENCODE reference annotation for the human and mouse genomes

(2018) Adam Frankish et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2019

(2018) Fiona Cunningham et al.   NUCLEIC ACIDS RESEARCH

High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing

(2017) Julien Lagarde et al.   NATURE GENETICS

Ensembl 2018

(2017) Daniel R Zerbino et al.   NUCLEIC ACIDS RESEARCH

Programmatic access to bioinformatics tools from EMBL-EBI update: 2017

(2017) Szymon Chojnacki et al.   NUCLEIC ACIDS RESEARCH

Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse

(2017) Cynthia L Smith et al.   NUCLEIC ACIDS RESEARCH

Variation in olfactory neuron repertoires is genetically controlled and environmentally modulated

(2017) Ximena Ibarra-Soria et al.   eLife

The human olfactory transcriptome

(2016) Tsviya Olender et al.   BMC GENOMICS

Prostate-Specific G-Protein Coupled Receptor, an Emerging Biomarker Regulating Inflammation and Prostate Cancer Invasion

(2016) M. Rodriguez et al.   CURRENT MOLECULAR MEDICINE

Upstream AUGs and upstream ORFs can regulate the downstream ORF in Plasmodium falciparum

(2015) Mayank Kumar et al.   MALARIA JOURNAL

The Mouse Genomes Project: a repository of inbred laboratory mouse strain genomes

(2015) David J. Adams et al.   MAMMALIAN GENOME

Identification of novel post-transcriptional features in olfactory receptor family mRNAs

(2015) Eleen Y. Shum et al.   NUCLEIC ACIDS RESEARCH

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2016

(2015) Andrew Yates et al.   NUCLEIC ACIDS RESEARCH

Hierarchical deconstruction of mouse olfactory sensory neurons: from whole mucosa to single-cell RNA-seq

(2015) Luis R. Saraiva et al.   Scientific Reports

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Extreme expansion of the olfactory receptor gene repertoire in African elephants and evolutionary dynamics of orthologous gene groups in 13 placental mammals

(2014) Yoshihito Niimura et al.   GENOME RESEARCH

The Olfactory Transcriptomes of Mice

(2014) Ximena Ibarra-Soria et al.   PLoS Genetics

Temporal patterns of odorant receptor gene expression in adult and aged mice

(2013) Mona Khan et al.   MOLECULAR AND CELLULAR NEUROSCIENCE

The missense of smell: functional variability in the human odorant receptor repertoire

(2013) Joel D Mainland et al.   NATURE NEUROSCIENCE

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Personal receptor repertoires: olfaction as a model

(2012) Tsviya Olender et al.   BMC GENOMICS

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

Community gene annotation in practice

(2012) J. E. Loveland et al.   Database-The Journal of Biological Databases and Curation

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

AnnoTrack - a tracking system for genome annotation

(2010) Felix Kokocinski et al.   BMC GENOMICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH