The draft genome of horseshoe crab Tachypleus tridentatus reveals its evolutionary scenario and well-developed innate immunity

Draft genomic and transcriptome resources for marine chelicerate Tachypleus tridentatus

(2019) Yong Yan Liao et al.   Scientific Data

CGPS: A machine learning-based approach integrating multiple gene set analysis tools for better prioritization of biologically relevant pathways

(2018) Chen Ai et al.   Journal of Genetics and Genomics

Chromosomal level reference genome of Tachypleus tridentatus provides insights into evolution and adaptation of horseshoe crabs

(2018) Li Gong et al.   Molecular Ecology Resources

The Draft Genome and Transcriptome of the Atlantic Horseshoe Crab,Limulus polyphemus

(2017) Stephen D. Simpson et al.   International Journal of Genomics

The India–Asia collision in north Pakistan: Insight from the U–Pb detrital zircon provenance of Cenozoic foreland basin

(2016) Lin Ding et al.   EARTH AND PLANETARY SCIENCE LETTERS

Opsin Repertoire and Expression Patterns in Horseshoe Crabs: Evidence from the Genome ofLimulus polyphemus(Arthropoda: Chelicerata)

(2016) Barbara-Anne Battelle et al.   Genome Biology and Evolution

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

De Novo Assembly and Characterization of Early Embryonic Transcriptome of the Horseshoe Crab Tachypleus tridentatus

(2016) Mingliang Chen et al.   PLoS One

A large family of Dscam genes with tandemly arrayed 5′ cassettes in Chelicerata

(2016) Yuan Yue et al.   Nature Communications

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Ancestral whole-genome duplication in the marine chelicerate horseshoe crabs

(2015) N J Kenny et al.   HEREDITY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

(2014) Marten Boetzer et al.   BMC BIOINFORMATICS

Biogeographic Analysis Reveals Ancient Continental Vicariance and Recent Oceanic Dispersal in Amphibians

(2014) R. Alexander Pyron   SYSTEMATIC BIOLOGY

The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima

(2014) Ariel D. Chipman et al.   PLOS BIOLOGY

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Chelicerate neural ground pattern in a Cambrian great appendage arthropod

(2013) Gengo Tanaka et al.   NATURE

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

“Mesozoic and Cenozoic lissamphibian and squamate assemblages of Laurasia”—introduction to the special issue

(2013) James D. Gardner et al.   Palaeobiodiversity and Palaeoenvironments

Signaling pathways regulating innate immune responses in shrimp

(2012) Fuhua Li et al.   FISH & SHELLFISH IMMUNOLOGY

Ixodes scapularis JAK-STAT Pathway Regulates Tick Antimicrobial Peptides, Thereby Controlling the Agent of Human Granulocytic Anaplasmosis

(2012) Lei Liu et al.   JOURNAL OF INFECTIOUS DISEASES

Distribution of living Cupressaceae reflects the breakup of Pangea

(2012) K. Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of homeobox genes

(2012) Peter W. H. Holland   Wiley Interdisciplinary Reviews-Developmental Biology

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Calibrated Tree Priors for Relaxed Phylogenetics and Divergence Time Estimation

(2011) Joseph Heled et al.   SYSTEMATIC BIOLOGY

Population dynamics of American horseshoe crabs-historic climatic events and recent anthropogenic pressures

(2010) SØREN FAURBY et al.   MOLECULAR ECOLOGY

THE OLDEST HORSESHOE CRAB: A NEW XIPHOSURID FROM LATE ORDOVICIAN KONSERVAT-LAGERSTÄTTEN DEPOSITS, MANITOBA, CANADA

(2010) DAVID M. RUDKIN et al.   PALAEONTOLOGY

The components of the Daphnia pulex immune system as revealed by complete genome sequencing

(2009) Seanna J McTaggart et al.   BMC GENOMICS

The STAT Pathway Mediates Late-Phase Immunity against Plasmodium in the Mosquito Anopheles gambiae

(2009) Lalita Gupta et al.   Cell Host & Microbe

An evolutionary conserved function of the JAK-STAT pathway in anti-dengue defense

(2009) J. A. Souza-Neto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

WSSV infection activates STAT in shrimp

(2008) Wei Yu Chen et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

The Dscam Homologue of the Crustacean Daphnia Is Diversified by Alternative Splicing Like in Insects

(2008) Daniela Brites et al.   MOLECULAR BIOLOGY AND EVOLUTION