Genome-wide analyses of cassava Pathogenesis-related (PR) gene families reveal core transcriptome responses to whitefly infestation, salicylic acid and jasmonic acid

Cassava whitefly, Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) in East African farming landscapes: a review of the factors determining abundance

(2018) S. Macfadyen et al.   BULLETIN OF ENTOMOLOGICAL RESEARCH

Defence transcriptome assembly and pathogenesis related gene family analysis in Pinus tecunumanii (low elevation)

(2018) Erik A. Visser et al.   BMC GENOMICS

The early transcriptome response of cassava (Manihot esculenta Crantz) to mealybug (Phenacoccus manihoti) feeding

(2018) Molemi E. Rauwane et al.   PLoS One

An optimized isolation protocol yields high-quality RNA from cassava tissues (Manihot esculenta Crantz)

(2018) Babak Behnam et al.   FEBS Open Bio

Molecular insights into Cassava brown streak virus susceptibility and resistance by profiling of the early host response

(2017) Ravi B. Anjanappa et al.   MOLECULAR PLANT PATHOLOGY

Gene expression atlas for the food security crop cassava

(2017) Mark C. Wilson et al.   NEW PHYTOLOGIST

Whitefly interactions with plants

(2017) Xiao-Wei Wang et al.   Current Opinion in Insect Science

A time series transcriptome analysis of cassava (Manihot esculenta Crantz) varieties challenged with Ugandan cassava brown streak virus

(2017) T. Amuge et al.   Scientific Reports

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

systemPipeR: NGS workflow and report generation environment

(2016) Tyler W. H. Backman et al.   BMC BIOINFORMATICS

Theobroma cacao L. pathogenesis-related gene tandem array members show diverse expression dynamics in response to pathogen colonization

(2016) Andrew S. Fister et al.   BMC GENOMICS

Sources of specificity in plant damaged-self recognition

(2016) Dalia Duran-Flores et al.   CURRENT OPINION IN PLANT BIOLOGY

Cassava (Manihot esculenta) transcriptome analysis in response to infection by the fungus Colletotrichum gloeosporioides using an oligonucleotide-DNA microarray

(2016) Yoshinori Utsumi et al.   JOURNAL OF PLANT RESEARCH

A Jasmonate-Inducible Defense Trait Transferred from Wild into Cultivated Tomato Establishes Increased Whitefly Resistance and Reduced Viral Disease Incidence

(2016) Rocío Escobar-Bravo et al.   Frontiers in Plant Science

Identification of genes differentially expressed in husk tomato (Physalis philadelphica) in response to whitefly (Trialeurodes vaporariorum) infestation

(2015) Martín Quintana-Camargo et al.   ACTA PHYSIOLOGIAE PLANTARUM

Effector-Triggered Immunity: From Pathogen Perception to Robust Defense

(2015) Haitao Cui et al.   Annual Review of Plant Biology

Sources of pest resistance in cassava

(2015) Soroush Parsa et al.   CROP PROTECTION

Hemipteran and dipteran pests: Effectors and plant host immune regulators

(2015) Isgouhi Kaloshian et al.   Journal of Integrative Plant Biology

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Transcriptional analysis of South African cassava mosaic virus-infected susceptible and tolerant landraces of cassava highlights differences in resistance, basal defense and cell wall associated genes during infection

(2014) Farhahna Allie et al.   BMC GENOMICS

Systematic analysis of phloem-feeding insect-induced transcriptional reprogramming in Arabidopsis highlights common features and reveals distinct responses to specialist and generalist insects

(2014) Christine H. Foyer et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNAseq analysis of cassava reveals similar plant responses upon infection with pathogenic and non-pathogenic strains of Xanthomonas axonopodis pv. manihotis

(2014) Alejandra Muñoz-Bodnar et al.   PLANT CELL REPORTS

Transcriptional Response of Virus-Infected Cassava and Identification of Putative Sources of Resistance for Cassava Brown Streak Disease

(2014) M. N. Maruthi et al.   PLoS One

Understanding cross-communication between aboveground and belowground tissues via transcriptome analysis of a sucking insect whitefly-infested pepper plants

(2013) Yong-Soon Park et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The large soybean (Glycine max) WRKY TF family expanded by segmental duplication events and subsequent divergent selection among subgroups

(2013) Guangjun Yin et al.   BMC PLANT BIOLOGY

Molecular determination of the predator community of a cassava whitefly in Colombia: pest-specific primer development and field validation

(2013) Jonathan G. Lundgren et al.   JOURNAL OF PEST SCIENCE

Construction of a cassava PR protein-interacting network duringXanthomonas axonopodispv.manihotisinfection

(2013) V. Román et al.   PLANT PATHOLOGY

Spatio-temporal patterns of genetic change amongst populations of cassava Bemisia tabaci whiteflies driving virus pandemics in East and Central Africa

(2013) James P. Legg et al.   VIRUS RESEARCH

Visualizing genomic information across chromosomes with PhenoGram

(2013) Daniel Wolfe et al.   BioData Mining

Evolution and Conservation of Plant NLR Functions

(2013) Florence Jacob et al.   Frontiers in Immunology

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Plant pattern recognition receptor complexes at the plasma membrane

(2012) Jacqueline Monaghan et al.   CURRENT OPINION IN PLANT BIOLOGY

An overall evaluation of the resistance (R) and pathogenesis-related (PR) superfamilies in soybean, as compared with Medicago and Arabidopsis

(2012) Ana C. Wanderley-Nogueira et al.   GENETICS AND MOLECULAR BIOLOGY

Induction of β-1,3-glucanase and chitinase activity in the defense response ofEruca sativaplants against the fungal pathogenAlternaria brassicicola

(2012) Poonam Gupta et al.   Journal of Plant Interactions

Is Cassava the Answer to African Climate Change Adaptation?

(2012) Andy Jarvis et al.   Tropical Plant Biology

Hormone Crosstalk in Plant Disease and Defense: More Than Just JASMONATE-SALICYLATE Antagonism

(2011) Alexandre Robert-Seilaniantz et al.   Annual Review of Phytopathology

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Characteristic expression of rice pathogenesis-related proteins in rice leaves during interactions with Xanthomonas oryzae pv. oryzae

(2011) Mingming Hou et al.   PLANT CELL REPORTS

A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq

(2011) Lin Wang et al.   PLoS One

Characterisation of the Vitis vinifera PR10 multigene family

(2010) Sylvain Lebel et al.   BMC PLANT BIOLOGY

Tomato Pathogenesis-related Protein Genes are Expressed in Response to Trialeurodes vaporariorum and Bemisia tabaci Biotype B Feeding

(2010) David P. Puthoff et al.   JOURNAL OF CHEMICAL ECOLOGY

Poplar and Pathogen Interactions: Insights fromPopulusGenome-Wide Analyses of Resistance and Defense Gene Families and Gene Expression Profiling

(2009) Sébastien Duplessis et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Networking by small-molecule hormones in plant immunity

(2009) Corné M J Pieterse et al.   Nature Chemical Biology

Salicylic acid-induced resistance to Fusarium oxysporum f. sp. lycopersici in tomato

(2009) Sudhamoy Mandal et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Avoiding Effective Defenses: Strategies Employed by Phloem-Feeding Insects

(2008) L. L. Walling   PLANT PHYSIOLOGY

Combined expression of chitinase and β-1,3-glucanase genes in indica rice (Oryza sativa L.) enhances resistance against Rhizoctonia solani

(2008) Ganapathi Sridevi et al.   PLANT SCIENCE