Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis

Contribution of dark septate fungi to the nutrient uptake and growth of rice plants

(2018) Carlos Vergara et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Lignocellulose degradation: An overview of fungi and fungal enzymes involved in lignocellulose degradation

(2018) Martina Andlar et al.   ENGINEERING IN LIFE SCIENCES

Lytic xylan oxidases from wood-decay fungi unlock biomass degradation

(2018) Marie Couturier et al.   Nature Chemical Biology

dbCAN2: a meta server for automated carbohydrate-active enzyme annotation

(2018) Han Zhang et al.   NUCLEIC ACIDS RESEARCH

Tools of the crook- infection strategies of fungal plant pathogens

(2018) Luis Rodriguez-Moreno et al.   PLANT JOURNAL

Linking secondary metabolites to gene clusters through genome sequencing of six diverseAspergillusspecies

(2018) Inge Kjærbølling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi

(2018) Dániel G. Knapp et al.   Scientific Reports

Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum

(2018) Maíra de Freitas Pereira et al.   Frontiers in Microbiology

Microbe Profile: Aspergillus fumigatus: a saprotrophic and opportunistic fungal pathogen

(2018) Wenxia Fang et al.   MICROBIOLOGY-SGM

Root endophytic fungal communities associated with pitch pine, switchgrass, and rosette grass in the pine barrens ecosystem

(2017) Jing Luo et al.   Fungal Biology

Effectors of Filamentous Plant Pathogens: Commonalities amid Diversity

(2017) Marina Franceschetti et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Evolution and genome architecture in fungal plant pathogens

(2017) Mareike Möller et al.   NATURE REVIEWS MICROBIOLOGY

antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification

(2017) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

The seed microbiome: Origins, interactions, and impacts

(2017) Eric B. Nelson   PLANT AND SOIL

The Role of the Fungal Cell Wall in the Infection of Plants

(2017) Ivey Geoghegan et al.   TRENDS IN MICROBIOLOGY

Swainsonine Biosynthesis Genes in Diverse Symbiotic and Pathogenic Fungi

(2017) Daniel Cook et al.   G3-Genes Genomes Genetics

Functions of fungal melanin beyond virulence

(2017) Radames J.B. Cordero et al.   Fungal Biology Reviews

Legal immigrants: invasion of alien microbial communities during winter occurring desert dust storms

(2017) Tobias Weil et al.   Microbiome

Deciphering the molecular mechanisms behind cellulase production inTrichoderma reesei, the hyper-cellulolytic filamentous fungus

(2016) Yosuke Shida et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

The toxicology mechanism of endophytic fungus and swainsonine in locoweed

(2016) Chenchen Wu et al.   ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY

PsAAT3 , an oomycete-specific aspartate aminotransferase, is required for full pathogenicity of the oomycete pathogen Phytophthora sojae

(2016) Rongbo Wang et al.   Fungal Biology

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Secreted fungal aspartic proteases: A review

(2016) Virginia Mandujano-González et al.   REVISTA IBEROAMERICANA DE MICOLOGIA

The decomposition of ectomycorrhizal fungal necromass

(2016) Christopher W. Fernandez et al.   SOIL BIOLOGY & BIOCHEMISTRY

Crystal structure of glycogen debranching enzyme and insights into its catalysis and disease-causing mutations

(2016) Liting Zhai et al.   Nature Communications

Extrolites of Aspergillus fumigatus and Other Pathogenic Species in Aspergillus Section Fumigati

(2016) Jens C. Frisvad et al.   Frontiers in Microbiology

Comparison of two Coniochaeta species (C. ligniaria and C. malacotricha) with a new pathogen of black pine needles – Sordaria macrospora

(2016) H. Ivanová et al.   PLANT PROTECTION SCIENCE

Unraveling the role of dark septate endophyte (DSE) colonizing maize (Zea mays) under cadmium stress: physiological, cytological and genic aspects

(2016) Jun-ling Wang et al.   Scientific Reports

Fungal Effectors and Plant Susceptibility

(2015) Libera Lo Presti et al.   Annual Review of Plant Biology

CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes

(2015) Thomas Wolf et al.   BIOINFORMATICS

Fungal chitinases: function, regulation, and potential roles in plant/pathogen interactions

(2015) Thorsten Langner et al.   CURRENT GENETICS

Discrete lineages within Alternaria alternata species group: Identification using new highly variable loci and support from morphological characters

(2015) Andrew D. Armitage et al.   Fungal Biology

Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence

(2015) Mark C. Derbyshire et al.   FUNGAL GENETICS AND BIOLOGY

Soil-Derived Microbial Consortia Enriched with Different Plant Biomass Reveal Distinct Players Acting in Lignocellulose Degradation

(2015) Maria Julia de Lima Brossi et al.   MICROBIAL ECOLOGY

DHN melanin biosynthesis in the plant pathogenic fungusBotrytis cinereais based on two developmentally regulated key enzyme (PKS)-encoding genes

(2015) Julia Schumacher   MOLECULAR MICROBIOLOGY

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Resolving the Phoma enigma

(2015) Q. Chen et al.   STUDIES IN MYCOLOGY

Lytic Polysaccharide Monooxygenases in Biomass Conversion

(2015) Glyn R. Hemsworth et al.   TRENDS IN BIOTECHNOLOGY

Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins

(2015) Clement Pellegrin et al.   Frontiers in Microbiology

Cerato-platanin family proteins: one function for multiple biological roles?

(2015) Ivan Baccelli   Frontiers in Plant Science

Plant Cell Wall–Degrading Enzymes and Their Secretion in Plant-Pathogenic Fungi

(2014) Christian P. Kubicek et al.   Annual Review of Phytopathology

Melanin pigments of fungi under extreme environmental conditions (Review)

(2014) N. N. Gessler et al.   APPLIED BIOCHEMISTRY AND MICROBIOLOGY

Comparative analysis of secretomes in basidiomycete fungi

(2014) Manuel Alfaro et al.   Journal of Proteomics

Oxalate-Metabolising Genes of the White-Rot Fungus Dichomitus squalens Are Differentially Induced on Wood and at High Proton Concentration

(2014) Miia R. Mäkelä et al.   PLoS One

MS-GF+ makes progress towards a universal database search tool for proteomics

(2014) Sangtae Kim et al.   Nature Communications

Fungal symbionts alter plant responses to global change

(2013) Stephanie N. Kivlin et al.   AMERICAN JOURNAL OF BOTANY

Plant Cell Wall Deconstruction by Ascomycete Fungi

(2013) N. Louise Glass et al.   Annual Review of Microbiology

Cerato-platanin shows expansin-like activity on cellulosic materials

(2013) Ivan Baccelli et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes

(2013) D. S. Curtis et al.   BIOINFORMATICS

Fungal plant cell wall-degrading enzyme database: a platform for comparative and evolutionary genomics in fungi and Oomycetes

(2013) Jaeyoung Choi et al.   BMC GENOMICS

Metabolites from Alternaria Fungi and Their Bioactivities

(2013) Jingfeng Lou et al.   MOLECULES

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

The Formation and Function of Plant Cuticles

(2013) T. H. Yeats et al.   PLANT PHYSIOLOGY

Alternaria redefined

(2013) J.H.C. Woudenberg et al.   STUDIES IN MYCOLOGY

A Review of the Applications of Chitin and Its Derivatives in Agriculture to Modify Plant-Microbial Interactions and Improve Crop Yields

(2013) Russell Sharp   Agronomy-Basel

Functional Analysis of the Degradation of Cellulosic Substrates by a Chaetomium globosum Endophytic Isolate

(2012) Paolo Longoni et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

New record of the fungus Coniochaeta prunicola on peaches from Slovakia

(2012) Helena Ivanová et al.   BIOLOGIA

Novel enzymes for the degradation of cellulose

(2012) Svein Horn et al.   Biotechnology for Biofuels

Degradation of different pectins by fungi: correlations and contrasts between the pectinolytic enzyme sets identified in genomes and the growth on pectins of different origin

(2012) Isabelle Benoit et al.   BMC GENOMICS

Fungi in hot and cold deserts with particular reference to microcolonial fungi

(2012) Katja Sterflinger et al.   Fungal Ecology

Disruption of Bcchs4, Bcchs6 or Bcchs7 chitin synthase genes in Botrytis cinerea and the essential role of class VI chitin synthase (Bcchs6)

(2012) Serena Morcx et al.   FUNGAL GENETICS AND BIOLOGY

Alternaria alternata allergen Alt a 1: A unique β-barrel protein dimer found exclusively in fungi

(2012) Maksymilian Chruszcz et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Phytate Degradation by Fungi and Bacteria that Inhabit Sawdust and Coffee Residue Composts

(2012) Mohamed Fathallh Eida et al.   MICROBES AND ENVIRONMENTS

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Defining the Predicted Protein Secretome of the Fungal Wheat Leaf Pathogen Mycosphaerella graminicola

(2012) Alexandre Morais do Amaral et al.   PLoS One

Characterization of extracellular lignocellulolytic enzymes of Coniochaeta sp. during corn stover bioconversion

(2012) Anita Ravindran et al.   PROCESS BIOCHEMISTRY

Current Understanding on Aflatoxin Biosynthesis and Future Perspective in Reducing Aflatoxin Contamination

(2012) Jiujiang Yu   Toxins

CELLULOSE DEGRADATION BY OXIDATIVE ENZYMES

(2012) Maria Dimarogona et al.   Computational and Structural Biotechnology Journal

Hidden Fungi, Emergent Properties: Endophytes and Microbiomes

(2011) Andrea Porras-Alfaro et al.   Annual Review of Phytopathology

Synthesis and assembly of fungal melanin

(2011) Helene C. Eisenman et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Fungal enzyme sets for plant polysaccharide degradation

(2011) Joost van den Brink et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi

(2011) Brian C King et al.   Biotechnology for Biofuels

Fusarium verticillioides chitin synthases CHS5 and CHS7 are required for normal growth and pathogenicity

(2011) Troy M. Larson et al.   CURRENT GENETICS

The Lignicolous Fungus Coniochaeta pulveracea and Its Interactions with Syntrophic Yeasts from the Woody Phylloplane

(2011) Andrea van Heerden et al.   MICROBIAL ECOLOGY

Diversity and distribution of soil fungal communities in a semiarid grassland

(2011) Andrea Porras-Alfaro et al.   MYCOLOGIA

A meta-analysis of plant responses to dark septate root endophytes

(2011) K. K. Newsham   NEW PHYTOLOGIST

Curation of characterized glycoside hydrolases of Fungal origin

(2011) C. Murphy et al.   Database-The Journal of Biological Databases and Curation

Chitin synthesis and fungal pathogenesis

(2010) Megan D Lenardon et al.   CURRENT OPINION IN MICROBIOLOGY

Melanization of appressoria is critical for the pathogenicity of Diplocarpon rosae

(2010) Emma W. Gachomo et al.   MOLECULAR BIOLOGY REPORTS

Coniochaeta (Lecythophora), Collophora gen. nov. and Phaeomoniella species associated with wood necroses of Prunus trees

(2010) U. Damm et al.   PERSOONIA

The Myosin Motor Domain of Fungal Chitin Synthase V Is Dispensable for Vesicle Motility but Required for Virulence of the Maize Pathogen Ustilago maydis

(2010) S. Treitschke et al.   PLANT CELL

A class-wide phylogenetic assessment of Dothideomycetes

(2010) C.L. Schoch et al.   STUDIES IN MYCOLOGY

Impact of mycotoxins on humans and animals

(2010) Mohamed E. Zain   Journal of Saudi Chemical Society

Fungal Effector Proteins

(2009) Ioannis Stergiopoulos et al.   Annual Review of Phytopathology

Melanin is an essential component for the integrity of the cell wall of Aspergillus fumigatus conidia

(2009) Marc Pihet et al.   BMC MICROBIOLOGY

Gibberella zeae chitin synthase genes, GzCHS5 and GzCHS7, are required for hyphal growth, perithecia formation, and pathogenicity

(2009) Jung-Eun Kim et al.   CURRENT GENETICS

Class III Chitin Synthase ChsB ofAspergillus nidulansLocalizes at the Sites of Polarized Cell Wall Synthesis and Is Required for Conidial Development

(2009) Kazuharu Fukuda et al.   EUKARYOTIC CELL

Disruption of the chitin synthase gene CHS1 from Fusarium asiaticum results in an altered structure of cell walls and reduced virulence

(2009) Yu-Bin Xu et al.   FUNGAL GENETICS AND BIOLOGY

A general suite of fungal endophytes dominate the roots of two dominant grasses in a semiarid grassland

(2009) H.H. Khidir et al.   JOURNAL OF ARID ENVIRONMENTS

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Novel Root Fungal Consortium Associated with a Dominant Desert Grass

(2008) A. Porras-Alfaro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Production of Pyomelanin, a Second Type of Melanin, via the Tyrosine Degradation Pathway in Aspergillus fumigatus

(2008) J. Schmaler-Ripcke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Colonization of torrefied grass fibers by plant-beneficial microorganisms

(2008) R. Trifonova et al.   APPLIED SOIL ECOLOGY

DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra

(2008) A. M. Mayampurath et al.   BIOINFORMATICS

Endophytes: An emerging tool for biological control

(2008) Paul A. Backman et al.   BIOLOGICAL CONTROL

annot8r: GO, EC and KEGG annotation of EST datasets

(2008) Ralf Schmid et al.   BMC BIOINFORMATICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Translocation of nitrogen and carbon integrates biotic crust and grass production in desert grassland

(2008) Laura E. Green et al.   JOURNAL OF ECOLOGY