RNA-seq studies using wheat PHYTOCHROME B and PHYTOCHROME C mutants reveal shared and specific functions in the regulation of flowering and shade-avoidance pathways

WheatExp: an RNA-seq expression database for polyploid wheat

(2015) Stephen Pearce et al.   BMC PLANT BIOLOGY

The FLOWERING LOCUS T/TERMINAL FLOWER 1 Gene Family: Functional Evolution and Molecular Mechanisms

(2015) Daniel P. Wickland et al.   Molecular Plant

Factorial combinations of protein interactions generate a multiplicity of florigen activation complexes in wheat and barley

(2015) Chengxia Li et al.   PLANT JOURNAL

Phytochrome diversity in green plants and the origin of canonical plant phytochromes

(2015) Fay-Wei Li et al.   Nature Communications

Genome-wide identification of microRNAs and their targets in wild type and phyB mutant provides a key link between microRNAs and the phyB-mediated light signaling pathway in rice

(2015) Wei Sun et al.   Frontiers in Plant Science

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis

(2014) Nicolas G. Bologna et al.   Annual Review of Plant Biology

Regulation of Zn and Fe transporters by the GPC1gene during early wheat monocarpic senescence

(2014) Stephen Pearce et al.   BMC PLANT BIOLOGY

Whole-genome discovery of miRNAs and their targets in wheat (Triticum aestivum L.)

(2014) Fenglong Sun et al.   BMC PLANT BIOLOGY

PHYTOCHROME C Is an Essential Light Receptor for Photoperiodic Flowering in the Temperate Grass, Brachypodium distachyon

(2014) Daniel P. Woods et al.   GENETICS

PIFs get BRright: PHYTOCHROME INTERACTING FACTORs as integrators of light and hormonal signals

(2014) Miguel de Lucas et al.   NEW PHYTOLOGIST

PIFs: Systems Integrators in Plant Development

(2014) P. Leivar et al.   PLANT CELL

Characterization of FLOWERING LOCUS T1 (FT1) Gene in Brachypodium and Wheat

(2014) Bo Lv et al.   PLoS One

Sorghum Phytochrome B Inhibits Flowering in Long Days by Activating Expression of SbPRR37 and SbGHD7, Repressors of SbEHD1, SbCN8 and SbCN12

(2014) Shanshan Yang et al.   PLoS One

Genetic Dissection of Photoperiod Response Based on GWAS of Pre-Anthesis Phase Duration in Spring Barley

(2014) Ahmad M. Alqudah et al.   PLoS One

PHYTOCHROME C plays a major role in the acceleration of wheat flowering under long-day photoperiod

(2014) A. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A mutually assured destruction mechanism attenuates light signaling in Arabidopsis

(2014) W. Ni et al.   SCIENCE

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(2014) et al.   SCIENCE

Phytochrome-interacting transcription factors PIF4 and PIF5 induce leaf senescence in Arabidopsis

(2014) Yasuhito Sakuraba et al.   Nature Communications

Photoreceptor Signaling Networks in Plant Responses to Shade

(2013) Jorge J. Casal   Annual Review of Plant Biology

The PRR family of transcriptional regulators reflects the complexity and evolution of plant circadian clocks

(2013) Eva M Farré et al.   CURRENT OPINION IN PLANT BIOLOGY

Light perception and signalling by phytochrome A

(2013) J. J. Casal et al.   JOURNAL OF EXPERIMENTAL BOTANY

Draft genome of the wheat A-genome progenitor Triticum urartu

(2013) Hong-Qing Ling et al.   NATURE

Regulation of FLOWERING LOCUS T by a MicroRNA in Brachypodium distachyon

(2013) L. Wu et al.   PLANT CELL

The bHLH proteins BEE and BIM positively modulate the shade avoidance syndrome in Arabidopsis seedlings

(2013) Nicolás Cifuentes-Esquivel et al.   PLANT JOURNAL

Exogenous Gibberellins Induce Wheat Spike Development under Short Days Only in the Presence of VERNALIZATION1

(2013) S. Pearce et al.   PLANT PHYSIOLOGY

Phytochrome C Is A Key Factor Controlling Long-Day Flowering in Barley

(2013) H. Nishida et al.   PLANT PHYSIOLOGY

Characterization of small RNAs and their target genes in wheat seedlings using sequencing-based approaches

(2013) Yong-Fang Li et al.   PLANT SCIENCE

Mutant Alleles of Photoperiod-1 in Wheat (Triticum aestivum L.) That Confer a Late Flowering Phenotype in Long Days

(2013) Lindsay M. Shaw et al.   PLoS One

Unanticipated regulatory roles forArabidopsisphytochromes revealed by null mutant analysis

(2013) Wei Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Convergence of auxin and gibberellin signaling on the regulation of the GATA transcription factors GNC and GNL in Arabidopsis thaliana

(2013) R. Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamic Antagonism between Phytochromes and PIF Family Basic Helix-Loop-Helix Factors Induces Selective Reciprocal Responses to Light and Shade in a Rapidly Responsive Transcriptional Network inArabidopsis

(2012) Pablo Leivar et al.   PLANT CELL

Phytochrome B increases drought tolerance by enhancing ABA sensitivity inArabidopsis thaliana

(2012) CARINA VERÓNICA GONZÁLEZ et al.   PLANT CELL AND ENVIRONMENT

Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling

(2012) Patricia Hornitschek et al.   PLANT JOURNAL

Phytochrome B inhibits binding of phytochrome-interacting factors to their target promoters

(2012) Eunae Park et al.   PLANT JOURNAL

Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing

(2012) Z. Tang et al.   PLANT PHYSIOLOGY

Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress

(2012) D. Todaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wheat TILLING Mutants Show That the Vernalization Gene VRN1 Down-Regulates the Flowering Repressor VRN2 in Leaves but Is Not Essential for Flowering

(2012) Andrew Chen et al.   PLoS Genetics

The differential expression of HvCO9, a member of the CONSTANS-like gene family, contributes to the control of flowering under short-day conditions in barley

(2011) Rie Kikuchi et al.   JOURNAL OF EXPERIMENTAL BOTANY

grassy tillers1 promotes apical dominance in maize and responds to shade signals in the grasses

(2011) C. J. Whipple et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Overexpression of the maize Corngrass1 microRNA prevents flowering, improves digestibility, and increases starch content of switchgrass

(2011) G. S. Chuck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure and Function of Plant Photoreceptors

(2010) Andreas Möglich et al.   Annual Review of Plant Biology

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

The GATA-type transcription factors GNC and GNL/CGA1 repress gibberellin signaling downstream from DELLA proteins and PHYTOCHROME-INTERACTING FACTORS

(2010) R. Richter et al.   GENES & DEVELOPMENT

Low red/far-red ratios delay spike and stem growth in wheat

(2010) Cristina Cecilia Ugarte et al.   JOURNAL OF EXPERIMENTAL BOTANY

ODDSOC2 Is a MADS Box Floral Repressor That Is Down-Regulated by Vernalization in Temperate Cereals

(2010) A. G. Greenup et al.   PLANT PHYSIOLOGY

Auxin transport through PIN-FORMED 3 (PIN3) controls shade avoidance and fitness during competition

(2010) D. H. Keuskamp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat

(2009) Cristobal Uauy et al.   BMC PLANT BIOLOGY

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

Phytochrome functions in Arabidopsis development

(2009) K. A. Franklin et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Histidine Kinase-Related Domain of Arabidopsis Phytochrome A Controls the Spectral Sensitivity and the Subcellular Distribution of the Photoreceptor

(2009) R. Muller et al.   PLANT PHYSIOLOGY

Auxin and Ethylene Regulate Elongation Responses to Neighbor Proximity Signals Independent of Gibberellin and DELLA Proteins in Arabidopsis

(2009) R. Pierik et al.   PLANT PHYSIOLOGY

Rapid Synthesis of Auxin via a New Tryptophan-Dependent Pathway Is Required for Shade Avoidance in Plants

(2008) Yi Tao et al.   CELL

Control of a key transition from prostrate to erect growth in rice domestication

(2008) Lubin Tan et al.   NATURE GENETICS

Genetic control of rice plant architecture under domestication

(2008) Jian Jin et al.   NATURE GENETICS

Structure and Functional Analysis of Wheat ICE (Inducer of CBF Expression) Genes

(2008) Mohamed Badawi et al.   PLANT AND CELL PHYSIOLOGY

Wheat FT protein regulatesVRN1transcription through interactions with FDL2

(2008) Chengxia Li et al.   PLANT JOURNAL

A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana

(2008) O. Loudet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photoperiod insensitive Ppd-A1a mutations in tetraploid wheat (Triticum durum Desf.)

(2008) Edward P. Wilhelm et al.   THEORETICAL AND APPLIED GENETICS

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development

(2008) Michael F Covington et al.   GENOME BIOLOGY