5′ untranslated regions: the next regulatory sequence in yeast synthetic biology
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Title
5′ untranslated regions: the next regulatory sequence in yeast synthetic biology
Authors
Keywords
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Journal
BIOLOGICAL REVIEWS
Volume 95, Issue 2, Pages 517-529
Publisher
Wiley
Online
2019-12-21
DOI
10.1111/brv.12575
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Note: Only part of the references are listed.- Deciphering the rules of mRNA structure differentiation in Saccharomyces cerevisiae in vivo and in vitro with deep neural networks
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- (2017) Josh T. Cuperus et al. GENOME RESEARCH
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- (2017) Alexey A. Gritsenko et al. PLoS Computational Biology
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- (2016) Hisashi Hoshida et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Novel Intronic RNA Structures Contribute to Maintenance of Phenotype in Saccharomyces cerevisiae
- (2016) K. B. Hooks et al. GENETICS
- Upstream Open Reading Frames Differentially Regulate Gene-specific Translation in the Integrated Stress Response
- (2016) Sara K. Young et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Translational control by 5'-untranslated regions of eukaryotic mRNAs
- (2016) A. G. Hinnebusch et al. SCIENCE
- Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation
- (2016) David E. Weinberg et al. Cell Reports
- Advances and current limitations in transcript-level control of gene expression
- (2015) John M Leavitt et al. CURRENT OPINION IN BIOTECHNOLOGY
- A renaissance in RNA synthetic biology: new mechanisms, applications and tools for the future
- (2015) James Chappell et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Alternative Splicing in Next Generation Sequencing Data of Saccharomyces cerevisiae
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- (2015) Heidi Redden et al. Nature Communications
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- (2014) Eric I. Sun et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Intron Evolution in Saccharomycetaceae
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- (2014) Stefanie A. Mortimer et al. NATURE REVIEWS GENETICS
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- (2014) Antony G. Wanless et al. PLoS One
- Ribozyme-Based Aminoglycoside Switches of Gene Expression Engineered by Genetic Selection in S. cerevisiae
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- Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes
- (2014) Nicholas T. Ingolia et al. Cell Reports
- The regulatory potential of upstream open reading frames in eukaryotic gene expression
- (2014) Klaus Wethmar Wiley Interdisciplinary Reviews-RNA
- Frontiers of yeast metabolic engineering: diversifying beyond ethanol and Saccharomyces
- (2013) Leqian Liu et al. CURRENT OPINION IN BIOTECHNOLOGY
- Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast
- (2013) C. J. McManus et al. GENOME RESEARCH
- Small, synthetic, GC-rich mRNA stem-loop modules 5′ proximal to the AUG start-codon predictably tune gene expression in yeast
- (2013) Erwin Lamping et al. Microbial Cell Factories
- In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
- (2013) Yiliang Ding et al. NATURE
- Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
- (2013) Silvi Rouskin et al. NATURE
- Composability of regulatory sequences controlling transcription and translation inEscherichia coli
- (2013) Sriram Kosuri et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Deciphering the rules by which 5'-UTR sequences affect protein expression in yeast
- (2013) S. Dvir et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global signatures of protein binding on structured RNAs in Saccharomyces cerevisiae
- (2013) YuCheng Yang et al. Science China-Life Sciences
- New Universal Rules of Eukaryotic Translation Initiation Fidelity
- (2013) Hadas Zur et al. PLoS Computational Biology
- Lives that introns lead after splicing
- (2013) Jay R. Hesselberth Wiley Interdisciplinary Reviews-RNA
- Controlling promoter strength and regulation inSaccharomyces cerevisiaeusing synthetic hybrid promoters
- (2012) John Blazeck et al. BIOTECHNOLOGY AND BIOENGINEERING
- Alternative Mechanisms to Initiate Translation in Eukaryotic mRNAs
- (2012) Encarnación Martínez-Salas et al. COMPARATIVE AND FUNCTIONAL GENOMICS
- Engineered riboswitches: Expanding researchers' toolbox with synthetic RNA regulators
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- High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch
- (2012) Joshua K. Michener et al. METABOLIC ENGINEERING
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- (2012) Yue Wan et al. MOLECULAR CELL
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- (2012) Eilon Sharon et al. NATURE BIOTECHNOLOGY
- Genome-wide ribosome profiling reveals complex translational regulation in response to oxidative stress
- (2012) M. V. Gerashchenko et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2011) Michael S. Siddiqui et al. FEMS YEAST RESEARCH
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- (2010) Daniel P. Riordan et al. NUCLEIC ACIDS RESEARCH
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- Predicting functional upstream open reading frames in Saccharomyces cerevisiae
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- Automated design of synthetic ribosome binding sites to control protein expression
- (2009) Howard M Salis et al. NATURE BIOTECHNOLOGY
- A fast and efficient translational control system for conditional expression of yeast genes
- (2009) Peter Kötter et al. NUCLEIC ACIDS RESEARCH
- Characterization of the functional role of nucleotides within the URE2 IRES element and the requirements for eIF2A-mediated repression
- (2009) L. C. Reineke et al. RNA
- Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
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- Dicistronic regulation of fluorescent proteins in the budding yeast Saccharomyces cerevisiae
- (2009) Sarah R. Edwards et al. YEAST
- Progress in Metabolic Engineering of Saccharomyces cerevisiae
- (2008) E. Nevoigt MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Deletion of Many Yeast Introns Reveals a Minority of Genes that Require Splicing for Function
- (2008) Julie Parenteau et al. MOLECULAR BIOLOGY OF THE CELL
- The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
- (2008) U. Nagalakshmi et al. SCIENCE
- Diverse RNA-Binding Proteins Interact with Functionally Related Sets of RNAs, Suggesting an Extensive Regulatory System
- (2008) Daniel J Hogan et al. PLOS BIOLOGY
- Re-programming of translation following cell stress allows IRES-mediated translation to predominate
- (2007) Keith A. Spriggs et al. BIOLOGY OF THE CELL
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