Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak

Comparative evaluation of direct plating and most probable number for enumeration of low levels of Listeria monocytogenes in naturally contaminated ice cream products

(2017) Yi Chen et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Core Genome Multilocus Sequence Typing for Identification of Globally Distributed Clonal Groups and Differentiation of Outbreak Strains of Listeria monocytogenes

(2016) Yi Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prevalence and Level of Listeria monocytogenes in Ice Cream Linked to a Listeriosis Outbreak in the United States

(2016) YI CHEN et al.   JOURNAL OF FOOD PROTECTION

Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing

(2015) Karen G. Jarvis et al.   BMC MICROBIOLOGY

Thermus parvatiensis RLT sp. nov., Isolated from a Hot Water Spring, Located Atop the Himalayan Ranges at Manikaran, India

(2015) Vatsala Dwivedi et al.   INDIAN JOURNAL OF MICROBIOLOGY

In SituEvaluation of Paenibacillus alvei in Reducing Carriage of Salmonella enterica Serovar Newport on Whole Tomato Plants

(2014) Sarah Allard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Analysis of Anoxybacillus Genomes from the Aspects of Lifestyle Adaptations, Prophage Diversity, and Carbohydrate Metabolism

(2014) Kian Mau Goh et al.   PLoS One

Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing

(2014) Nur A. Hasan et al.   PLoS One

Longitudinal analysis of microbial interaction between humans and the indoor environment

(2014) S. Lax et al.   SCIENCE

Multistate Outbreak of Listeriosis Associated with Cantaloupe

(2013) Jeffrey T. McCollum et al.   NEW ENGLAND JOURNAL OF MEDICINE

Co-Enriching Microflora Associated with Culture Based Methods to Detect Salmonella from Tomato Phyllosphere

(2013) Andrea R. Ottesen et al.   PLoS One

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Mutational robustness of 16S ribosomal RNA, shown by experimental horizontal gene transfer in Escherichia coli

(2012) K. Kitahara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

An Extreme Thermophile, Thermus thermophilus, Is a Polyploid Bacterium

(2010) N. Ohtani et al.   JOURNAL OF BACTERIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Appropriate maturation and folding of 16S rRNA during 30S subunit biogenesis are critical for translational fidelity

(2010) B. Roy-Chaudhuri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA