4.6 Article

In Situ Evaluation of Paenibacillus alvei in Reducing Carriage of Salmonella enterica Serovar Newport on Whole Tomato Plants

Journal

APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Volume 80, Issue 13, Pages 3842-3849

Publisher

AMER SOC MICROBIOLOGY
DOI: 10.1128/AEM.00835-14

Keywords

-

Ask authors/readers for more resources

Recently, tomatoes have been implicated as a primary vehicle in food-borne outbreaks of Salmonella enterica serovar Newport and other Salmonella serovars. Long-term intervention measures to reduce Salmonella prevalence on tomatoes remain elusive for growing and postharvest environments. A naturally occurring bacterium identified by 16S rRNA gene sequencing as Paenibacillus alvei was isolated epiphytically from plants native to the Virginia Eastern Shore tomato-growing region. After initial antimicrobial activity screening against Salmonella and 10 other bacterial pathogens associated with the human food supply, strain TS-15 was further used to challenge an attenuated strain of S. Newport on inoculated fruits, leaves, and blossoms of tomato plants in an insect-screened high tunnel with a split-plot design. Survival of Salmonella after inoculation was measured for groups with and those without the antagonist at days 0, 1, 2, and 3 and either day 5 for blossoms or day 6 for fruits and leaves. Strain TS-15 exhibited broad-range antimicrobial activity against both major food-borne pathogens and major bacterial phytopathogens of tomato. After P. alvei strain TS-15 was applied onto the fruits, leaves, and blossoms of tomato plants, the concentration of S. Newport declined significantly (P <= 0.05) compared with controls. Astonishingly,>90% of the plants had no detectable levels of Salmonella by day 5 for blossoms. The naturally occurring antagonist strain TS-15 is highly effective in reducing the carriage of Salmonella Newport on whole tomato plants. The application of P. alvei strain TS-15 is a promising approach for reducing the risk of Salmonella contamination during tomato production.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.6
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Food Science & Technology

Survey of Salmonella in raw tree nuts at retail in the United States

Guodong Zhang, Lijun Hu, Yan Luo, Sofia M. Santillana Farakos, Rhoma Johnson, Virginia N. Scott, Phillip Curry, David Melka, Eric W. Brown, Errol Strain, Vincent K. Bunning, Steven M. Musser, Thomas S. Hammack

Summary: This study aimed to estimate the prevalence, contamination level, and genetic diversity of Salmonella in selected raw, shelled tree nuts at retail markets in the United States. Results showed varying prevalence rates of Salmonella in different types of nuts, with most samples having low levels of the bacteria. There was no significant difference in Salmonella prevalence between nuts sourced from different types of retail stores and between organic and conventional nuts.

JOURNAL OF FOOD SCIENCE (2021)

Article Infectious Diseases

A Multidrug-Resistant Salmonella Infantis Clone Is Spreading and Recombining in the United States

Gregory H. Tyson, Cong Li, Lucas B. Harrison, Gordon Martin, Chih-Hao Hsu, Heather Tate, Thu-Thuy Tran, Errol Strain, Shaohua Zhao

Summary: This study conducted short-read sequencing analysis of the ESI clone of Salmonella Infantis in poultry in the United States, finding that this clone first appeared in retail meats in Tennessee in 2014 and had spread nationwide by 2019, comprising 29% of all Salmonella isolated from retail chickens and 7% from retail turkey. Long-read sequencing data showed substantial recombination in the pESI plasmid, resulting in the presence of multiple resistance genes.

MICROBIAL DRUG RESISTANCE (2021)

Article Microbiology

Genomic Drivers of Multidrug-Resistant Shigella Affecting Vulnerable Patient Populations in the United States and Abroad

Jay Noboru Worley, Kiran Javkar, Maria Hoffmann, Kristen Hysell, Amanda Garcia-Williams, Kaitlin Tagg, Sanjat Kanjilal, Errol Strain, Mihai Pop, Marc Allard, Louise Francois Watkins, Lynn Bry

Summary: MDR Shigella infections are a global concern among MSM, with new macrolide-resistant strains complicating treatment. Genomic analyses reveal resistant genes in US Shigella isolates and the receptivity of certain strains to plasmid acquisition. Leveraging integrated genomic-epidemiologic analyses can guide targeted clinical actions and public health efforts to combat the spread of multidrug-resistant Shigella.
Article Biotechnology & Applied Microbiology

GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians

Jayanthi Gangiredla, Hugh Rand, Daniel Benisatto, Justin Payne, Charles Strittmatter, Jimmy Sanders, William J. Wolfgang, Kevin Libuit, James B. Herrick, Melanie Prarat, Magaly Toro, Thomas Farrell, Errol Strain

Summary: GalaxyTrakr is a customized instance of the Galaxy platform designed for laboratory scientists conducting food safety regulatory research. It provides tools for quality assessment, linking clinical isolates with food/environmental samples, and exploring new methodologies like metagenomics. With over 600 registered users and 450,000 analytical jobs processed, it promotes collaboration across public health laboratories and supports consistent interpretation of results.

BMC GENOMICS (2021)

Correction Biotechnology & Applied Microbiology

Phylogenetic and Biogeographic Patterns of Vibrio parahaemolyticus Strains from North America Inferred from Whole-Genome Sequence Data (vol 87, e01403-20, 2021)

John J. Miller, Bart C. Weimer, Ruth Timme, Catharina H. M. Ludeke, James B. Pettengill, D. J. Darwin Bandoy, Allison M. Weis, James Kaufman, B. Carol Huang, Justin Payne, Errol Strain, Jessica L. Jones

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2021)

Article Biotechnology & Applied Microbiology

Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads

Seth Commichaux, Kiran Javkar, Padmini Ramachandran, Niranjan Nagarajan, Denis Bertrand, Yi Chen, Elizabeth Reed, Narjol Gonzalez-Escalona, Errol Strain, Hugh Rand, Mihai Pop, Andrea Ottesen

Summary: Integration of long and short read sequencing can expedite the reconstruction of high-quality pathogen genomes, with long reads spanning repetitive regions and short reads accurately analyzing core genes. However, long reads have lower accuracy while short reads result in fragmented assemblies.

BMC GENOMICS (2021)

Article Microbiology

Core Genome MLST for Source Attribution of Campylobacter coli

Lucas Harrison, Sampa Mukherjee, Chih-Hao Hsu, Shenia Young, Errol Strain, Qijing Zhang, Glenn E. Tillman, Cesar Morales, Jovita Haro, Shaohua Zhao

Summary: Utilizing core genome multilocus sequence typing and minimal multilocus distance methodology, the relative contribution of different sources of C. coli to human infections can be evaluated, serving as an indicator of antimicrobial resistance.

FRONTIERS IN MICROBIOLOGY (2021)

Article Microbiology

Long-Read Sequencing Reveals Evolution and Acquisition of Antimicrobial Resistance and Virulence Genes in Salmonella enterica

Cong Li, Gregory H. Tyson, Chih-Hao Hsu, Lucas Harrison, Errol Strain, Thu-Thuy Tran, Glenn E. Tillman, Uday Dessai, Patrick F. McDermott, Shaohua Zhao

Summary: This study used long-read sequencing to investigate the genomic heterogeneity and antimicrobial resistance mechanisms of Salmonella isolated from retail meats and food animals. It found significant genetic variation among different serotypes, with the presence of plasmids playing a key role in genomic variability. Moreover, the bacteria's resistance mechanisms may be associated with plasmid types, sources, and serotypes.

FRONTIERS IN MICROBIOLOGY (2021)

Article Microbiology

Whole-Genome Assessment of Clinical Acinetobacter baumannii Isolates Uncovers Potentially Novel Factors Influencing Carbapenem Resistance

Kiran Javkar, Hugh Rand, Maria Hoffmann, Yan Luo, Saul Sarria, Nagarajan Thirunavukkarasu, Christine A. Pillai, Patrick McGann, J. Kristie Johnson, Errol Strain, Mihai Pop

Summary: This large-scale whole-genome genotype-phenotype association study on 349 A. baumannii isolates identified 10 known resistance genes significantly associated with resistance to imipenem and revealed a conserved chromosomal region exclusive to imipenem-susceptible isolates. These findings provide new hypotheses for future research in understanding the genetic factors underlying carbapenem resistance in A. baumannii.

FRONTIERS IN MICROBIOLOGY (2021)

Article Genetics & Heredity

Multi- laboratory evaluation of the Illumina iSeq platform for whole genome sequencing of Salmonella, Escherichia coli and Listeria

Patrick K. Mitchell, Leyi Wang, Bryce J. Stanhope, Brittany D. Cronk, Renee Anderson, Shipra Mohan, Lijuan Zhou, Susan Sanchez, Paula Bartlett, Carol Maddox, Vanessa DeShambo, Rinosh Mani, Lindsy M. Hengesbach, Sarah Gresch, Katie Wright, Sunil Mor, Shuping Zhang, Zhenyu Shen, Lifang Yan, Rebecca Mackey, Rebecca Franklin-Guild, Yan Zhang, Melanie Prarat, Katherine Shiplett, Akhilesh Ramachandran, Sai Narayanan, Justin Sanders, Andree A. Hunkapiller, Kevin Lahmers, Amanda A. Carbonello, Nicole Aulik, Ailam Lim, Jennifer Cooper, Angelica Jones, Jake Guag, Sarah M. Nemser, Gregory H. Tyson, Ruth Timme, Errol Strain, Renate Reimschuessel, Olgica Ceric, Laura B. Goodman

Summary: There is a growing need for public health and veterinary laboratories to perform whole genome sequencing (WGS) for monitoring antimicrobial resistance (AMR) and protecting the safety of people and animals. The iSeq platform, with its smaller size and affordability, is a viable option for small laboratories interested in genomic surveillance of microbial pathogens. The Illumina DNA Prep library preparation kit produced high-quality assemblies and nearly complete AMR gene annotations, making it an effective choice for generating WGS data.

MICROBIAL GENOMICS (2022)

Article Microbiology

Prevalence of Antimicrobial Resistance in Select Bacteria From Retail Seafood-United States, 2019

Heather Tate, Sherry Ayers, Epiphanie Nyirabahizi, Cong Li, Stacey Borenstein, Shenia Young, Crystal Rice-Trujillo, Sanchez Saint Fleurant, Sonya Bodeis-Jones, Xunde Li, Melissa Tobin-D'Angelo, Victoriya Volkova, Rachel Hardy, Lisa Mingle, Nkuchia M. M'ikanatha, Laura Ruesch, Chris A. Whitehouse, Gregory H. Tyson, Errol Strain, Patrick F. McDermott

Summary: In 2019, a survey in the United States found that shrimp was the most susceptible seafood to bacterial contamination, and seafood from Asia and Latin America was more likely to be contaminated compared to North American seafood. The resistance testing showed that most antibiotics were still effective against the bacteria, but some medically relevant antimicrobial resistance genes were detected.

FRONTIERS IN MICROBIOLOGY (2022)

Article Food Science & Technology

Use of Large-Scale Genomics to Identify the Role of Animals and Foods as Potential Sources of Extraintestinal Pathogenic Escherichia coli That Cause Human Illness

Lucas Harrison, Gregory H. Tyson, Errol Strain, Rebecca L. Lindsey, Nancy Strockbine, Olgica Ceric, Gamola Z. Fortenberry, Beth Harris, Sheryl Shaw, Glenn Tillman, Shaohua Zhao, Uday Dessai

Summary: This study used genomic data to assess potential sources of ExPEC strains and found a higher likelihood of human infection-related strains in food animals and companion animals. Additionally, strains in high relative risk groups were more commonly resistant to antimicrobial drugs. This study highlights the importance of a One Health approach in identifying and managing human pathogens.

FOODS (2022)

Article Food Science & Technology

Toward the Adoption of Loop-Mediated Isothermal Amplification for Salmonella Screening at the National Antimicrobial Resistance Monitoring System's Retail Meat Sites

Shenia R. Young, Kelly J. Domesle, Ryan C. McDonald, Kristen A. Lozinak, Pongpan Laksanalamai, Erin Harrell, Siddhartha Thakur, Claudine Kabera, Errol A. Strain, Patrick F. McDermott, Beilei Ge

Summary: The study evaluated a loop-mediated isothermal amplification (LAMP) assay for the rapid screening of Salmonella. The results showed 100% sensitivity for LAMP compared to culture, and the method was found to streamline the laboratory workflow.

FOODBORNE PATHOGENS AND DISEASE (2022)

Article Multidisciplinary Sciences

Geography shapes the genomics and antimicrobial resistance of Salmonella enterica Serovar Enteritidis isolated from humans

Guojie Cao, Shaohua Zhao, Dai Kuang, Chih-Hao Hsu, Lanlan Yin, Yan Luo, Zhao Chen, Xuebin Xu, Errol Strain, Patrick McDermott, Marc Allard, Eric Brown, Jianghong Meng, Jie Zheng

Summary: MDR Salmonella has been a persistent challenge in public health and food safety, with higher prevalence in China compared to the U.S. and other countries. A genomic analysis of 197 S. Enteritidis genomes revealed four major clades, with MDR isolates predominantly found in clades II and III. Chinese isolates carried specific antimicrobial resistance genes and plasmid types, while African isolates had their own pattern of resistance genes and plasmids. The study also identified differences in virulence operons, pathogenicity islands, and other accessory genes among the isolates. These findings provide valuable insights into the diversification of MDR S. Enteritidis.

SCIENTIFIC REPORTS (2023)

Article Biochemical Research Methods

PRAWNS: compact pan-genomic features for whole-genome population genomics

Kiran Javkar, Hugh Rand, Errol Strain, Mihai Pop

Summary: This article presents PRAWNS, an efficient and scalable tool for multiple-genome analysis, which can handle large-scale genotype-phenotype association studies.

BIOINFORMATICS (2023)

No Data Available