Network analysis of transcriptomics expands regulatory landscapes inSynechococcussp. PCC 7002

Consequences ofccmRdeletion on respiration, fermentation and H2metabolism in cyanobacteriumSynechococcus sp. PCC 7002

(2016) Anagha Krishnan et al.   BIOTECHNOLOGY AND BIOENGINEERING

Torn apart and reunited: impact of a heterotroph on the transcriptome of Prochlorococcus

(2016) Steven J Biller et al.   ISME Journal

Light-dependent chlorophyll f synthase is a highly divergent paralog of PsbA of photosystem II

(2016) M.-Y. Ho et al.   SCIENCE

In the Limelight: Photoreceptors in Cyanobacteria

(2016) Devaki Bhaya   mBio

The family of phytochrome-like photoreceptors: diverse, complex and multi-colored, but very useful

(2015) Katrin Anders et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Expression profiling of the bloom-forming cyanobacterium Nodularia CCY9414 under light and oxidative stress conditions

(2015) Matthias Kopf et al.   ISME Journal

NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning

(2015) Nathan C. Rockwell et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Fur-type transcriptional repressors and metal homeostasis in the cyanobacterium Synechococcus sp. PCC 7002

(2015) Marcus Ludwig et al.   Frontiers in Microbiology

Daily Expression Pattern of Protein-Encoding Genes and Small Noncoding RNAs in Synechocystis sp. Strain PCC 6803

(2014) Christian Beck et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The FUR (ferric uptake regulator) superfamily: Diversity and versatility of key transcriptional regulators

(2014) María F. Fillat   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa

(2014) Sergiu Netotea et al.   BMC GENOMICS

Inferring the relation between transcriptional and posttranscriptional regulation from expression compendia

(2014) Ivan Ishchukov et al.   BMC MICROBIOLOGY

Inference of interactions in cyanobacterial–heterotrophic co-cultures via transcriptome sequencing

(2014) Alexander S Beliaev et al.   ISME Journal

TargetRNA2: identifying targets of small regulatory RNAs in bacteria

(2014) Mary Beth Kery et al.   NUCLEIC ACIDS RESEARCH

Deep Sequencing-Based Identification of Small Regulatory RNAs in Synechocystis sp. PCC 6803

(2014) Wen Xu et al.   PLoS One

Small RNAs in mycobacteria: an unfolding story

(2014) Katie Haning et al.   Frontiers in Cellular and Infection Microbiology

Feedback-controlled LED photobioreactor for photophysiological studies of cyanobacteria

(2013) Matthew R. Melnicki et al.   BIORESOURCE TECHNOLOGY

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

(2013) Pavel S Novichkov et al.   BMC GENOMICS

Separating the Drivers from the Driven: Integrative Network and Pathway Approaches Aid Identification of Disease Biomarkers from High-Throughput Data

(2013) Jason E. McDermott et al.   DISEASE MARKERS

Computational analysis of bacterial RNA-Seq data

(2013) Ryan McClure et al.   NUCLEIC ACIDS RESEARCH

GeneFriends: An online co-expression analysis tool to identify novel gene targets for aging and complex diseases

(2012) Sipko van Dam et al.   BMC GENOMICS

Non-coding RNAs in marine Synechococcus and their regulation under environmentally relevant stress conditions

(2012) Gregor Gierga et al.   ISME Journal

Robust Detection of Hierarchical Communities from Escherichia coli Gene Expression Data

(2012) Santiago Treviño et al.   PLoS Computational Biology

“Guilt by Association” Is the Exception Rather Than the Rule in Gene Networks

(2012) Jesse Gillis et al.   PLoS Computational Biology

Acclimation of the Global Transcriptome of the Cyanobacterium Synechococcus sp. Strain PCC 7002 to Nutrient Limitations and Different Nitrogen Sources

(2012) Marcus Ludwig et al.   Frontiers in Microbiology

Synechococcus sp. Strain PCC 7002 Transcriptome: Acclimation to Temperature, Salinity, Oxidative Stress, and Mixotrophic Growth Conditions

(2012) Marcus Ludwig et al.   Frontiers in Microbiology

The Fur regulon in anaerobically grown Salmonella enterica sv. Typhimurium: identification of new Fur targets

(2011) Bryan Troxell et al.   BMC MICROBIOLOGY

Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella

(2011) Hyunjin Yoon et al.   BMC Systems Biology

Emerging Perspectives on the Mechanisms, Regulation, and Distribution of Light Color Acclimation in Cyanobacteria

(2011) Andrian Gutu et al.   Molecular Plant

The Impact of Multifunctional Genes on "Guilt by Association" Analysis

(2011) Jesse Gillis et al.   PLoS One

Functional characterization of bacterial sRNAs using a network biology approach

(2011) S. R. Modi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Tricarboxylic Acid Cycle in Cyanobacteria

(2011) S. Zhang et al.   SCIENCE

Transcription Profiling of the Model Cyanobacterium Synechococcus sp. Strain PCC 7002 by Next-Gen (SOLiD™) Sequencing of cDNA

(2011) Marcus Ludwig et al.   Frontiers in Microbiology

Cyanobacterial NDH-1 complexes: Novel insights and remaining puzzles

(2010) Natalia Battchikova et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Bottlenecks and Hubs in Inferred Networks Are Important for Virulence in Salmonella typhimurium

(2009) Jason E. McDermott et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Cyanobacteriochromes: a new superfamily of tetrapyrrole-binding photoreceptors in cyanobacteria

(2008) Masahiko Ikeuchi et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

The Challenge of Regulation in a Minimal Photoautotroph: Non-Coding RNAs in Prochlorococcus

(2008) Claudia Steglich et al.   PLoS Genetics