ViromeScan: a new tool for metagenomic viral community profiling

Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

(2015) Jason M. Norman et al.   CELL

Gut Inflammation and Immunity: What Is the Role of the Human Gut Virome?

(2015) Alfredo Focà et al.   MEDIATORS OF INFLAMMATION

Gut DNA viromes of Malawian twins discordant for severe acute malnutrition

(2015) Alejandro Reyes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metavir 2: new tools for viral metagenome comparison and assembled virome analysis

(2014) Simon Roux et al.   BMC BIOINFORMATICS

Metagenomic analysis of double-stranded DNA viruses in healthy adults

(2014) Kristine M Wylie et al.   BMC BIOLOGY

The Virome in Mammalian Physiology and Disease

(2014) Herbert W. Virgin   CELL

Expanding the Role of the Virome: Commensalism in the Gut

(2014) Ken Cadwell   JOURNAL OF VIROLOGY

Geographic variation in the eukaryotic virome of human diarrhea

(2014) Lori R. Holtz et al.   VIROLOGY

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

(2014) Bas E. Dutilh et al.   Nature Communications

From deep sequencing to viral tagging: Recent advances in viral metagenomics

(2013) Dana Willner et al.   BIOESSAYS

First Isolation of Mimivirus in a Patient With Pneumonia

(2013) Hanene Saadi et al.   CLINICAL INFECTIOUS DISEASES

Shan Virus: A New Mimivirus Isolated from the Stool of a Tunisian Patient with Pneumonia

(2013) Hanene Saadi et al.   INTERVIROLOGY

Evidence of the megavirome in humans

(2013) Philippe Colson et al.   JOURNAL OF CLINICAL VIROLOGY

Marseillevirus-Like Virus Recovered From Blood Donated by Asymptomatic Humans

(2013) Nikolay Popgeorgiev et al.   JOURNAL OF INFECTIOUS DISEASES

Viral and Bacterial Interactions in the Upper Respiratory Tract

(2013) Astrid A. T. M. Bosch et al.   PLoS Pathogens

Advances in computational analysis of metagenome sequences

(2012) Colin F. Davenport et al.   ENVIRONMENTAL MICROBIOLOGY

Acute Diarrhea in West African Children: Diverse Enteric Viruses and a Novel Parvovirus Genus

(2012) T. G. Phan et al.   JOURNAL OF VIROLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Computational tools for viral metagenomics and their application in clinical research

(2012) L. Fancello et al.   VIROLOGY

Ocean viruses: Rigorously evaluating the metagenomic sample-to-sequence pipeline

(2012) Melissa B. Duhaime et al.   VIROLOGY

VIROME: a standard operating procedure for analysis of viral metagenome sequences

(2012) K. Eric Wommack et al.   Standards in Genomic Sciences

Metagenomics and future perspectives in virus discovery

(2012) John L Mokili et al.   Current Opinion in Virology

Genome–virome interactions: examining the role of common viral infections in complex disease

(2011) Ellen F. Foxman et al.   NATURE REVIEWS MICROBIOLOGY

TheViral MetaGenome Annotation Pipeline (VMGAP):an automated tool for the functional annotation of viral Metagenomic shotgun sequencing data

(2011) Hernan A. Lorenzi et al.   Standards in Genomic Sciences

Redefining Chronic Viral Infection

(2009) Herbert W. Virgin et al.   CELL

Laboratory procedures to generate viral metagenomes

(2009) Rebecca V Thurber et al.   Nature Protocols

Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach

(2009) Shota Nakamura et al.   PLoS One

The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes

(2009) Florent E. Angly et al.   PLoS Computational Biology

A New Arenavirus in a Cluster of Fatal Transplant-Associated Diseases

(2008) Gustavo Palacios et al.   NEW ENGLAND JOURNAL OF MEDICINE