Canalization of gene expression is a major signature of regulatory cold adaptation in temperate Drosophila melanogaster

Positive Selection at the Polyhomeotic Locus Led to Decreased Thermosensitivity of Gene Expression in Temperate Drosophila melanogaster

(2015) Susanne Voigt et al.   GENETICS

Temperature-Related Reaction Norms of Gene Expression: Regulatory Architecture and Functional Implications

(2015) Jun Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Non-adaptive plasticity potentiates rapid adaptive evolution of gene expression in nature

(2015) Cameron K. Ghalambor et al.   NATURE

Survival Rate and Transcriptional Response upon Infection with the Generalist Parasite Beauveria bassiana in a World-Wide Sample of Drosophila melanogaster

(2015) Francesco Paparazzo et al.   PLoS One

Parallel molecular routes to cold adaptation in eight genera of New Zealand stick insects

(2015) Alice B. Dennis et al.   Scientific Reports

Positive Selection at the Polyhomeotic Locus Led to Decreased Thermosensitivity of Gene Expression in Temperate Drosophila melanogaster

(2015) Susanne Voigt et al.   GENETICS

The bristle patterning genes hairy and extramacrochaetae regulate the development of structures required for flight in Diptera

(2014) Marta Costa et al.   DEVELOPMENTAL BIOLOGY

Natural Selection Canalizes Expression Variation of Environmentally Induced Plasticity-Enabling Genes

(2014) Joseph R. Shaw et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fine-Mapping and Selective Sweep Analysis of QTL for Cold Tolerance in Drosophila melanogaster

(2014) R. Wilches et al.   G3-Genes Genomes Genetics

NextGenMap: fast and accurate read mapping in highly polymorphic genomes

(2013) Fritz J. Sedlazeck et al.   BIOINFORMATICS

Increased abundance ofFrostmRNA during recovery from cold stress is not essential for cold tolerance in adultDrosophila melanogaster

(2013) H. Udaka et al.   INSECT MOLECULAR BIOLOGY

Transcriptomic analysis of inbreeding depression in cold-sensitiveDrosophila melanogastershows upregulation of the immune response

(2013) C. J. Vermeulen et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

FlyBase 102—advanced approaches to interrogating FlyBase

(2013) Susan E. St. Pierre et al.   NUCLEIC ACIDS RESEARCH

Variation of Gene Expression Associated with Colonisation of an Anthropized Environment: Comparison between African and European Populations of Drosophila simulans

(2013) François Wurmser et al.   PLoS One

The impacts of repeated cold exposure on insects

(2012) K. E. Marshall et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Combined transcriptomic and metabolomic approach uncovers molecular mechanisms of cold tolerance in a temperate flesh fly

(2012) Nicholas M. Teets et al.   PHYSIOLOGICAL GENOMICS

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Population transcriptomics of Drosophila melanogaster females

(2011) Lena Müller et al.   BMC GENOMICS

Molecular chaperones in targeting misfolded proteins for ubiquitin-dependent degradation

(2011) Franziska Kriegenburg et al.   FEBS Journal

Divergent transcriptomic responses to repeated and single cold exposures in Drosophila melanogaster

(2011) J. Zhang et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Knocking down expression of Hsp22 and Hsp23 by RNA interference affects recovery from chill coma in Drosophila melanogaster

(2010) H. Colinet et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Whole-Genome Expression Plasticity across Tropical and Temperate Drosophila melanogaster Populations from Eastern Australia

(2010) M. T. Levine et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification of X-linked quantitative trait loci affecting cold tolerance in Drosophila melanogaster and fine mapping by selective sweep analysis

(2010) NICOLAS SVETEC et al.   MOLECULAR ECOLOGY

Functional Characterization of the Frost Gene in Drosophila melanogaster: Importance for Recovery from Chill Coma

(2010) Hervé Colinet et al.   PLoS One

Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower

(2010) A. S. Chanderbali et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Independent filtering increases detection power for high-throughput experiments

(2010) R. Bourgon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Temporal expression of heat shock genes during cold stress and recovery from chill coma in adult Drosophila melanogaster

(2009) Hervé Colinet et al.   FEBS Journal

Comparative analysis of ESCRT-I, ESCRT-II and ESCRT-III function in Drosophila by efficient isolation of ESCRT mutants

(2009) T. Vaccari et al.   JOURNAL OF CELL SCIENCE

Selection for cold resistance alters gene transcript levels in Drosophila melanogaster

(2009) M. Telonis-Scott et al.   JOURNAL OF INSECT PHYSIOLOGY

Chaperonin Contributes to Cold Hardiness of the Onion Maggot Delia antiqua through Repression of Depolymerization of Actin at Low Temperatures

(2009) Takumi Kayukawa et al.   PLoS One

Canalization of Gene Expression in the Drosophila Blastoderm by Gap Gene Cross Regulation

(2009) Manu et al.   PLOS BIOLOGY

QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative PCR

(2008) Samuel Arvidsson et al.   BMC BIOINFORMATICS

Characterization of theDrosophila melanogaster retiningene encoding a cornea-specific protein

(2008) E. Kim et al.   INSECT MOLECULAR BIOLOGY

Gene expression, antiparasitic activity, and functional evolution of the drosomycin family

(2008) Caihuan Tian et al.   MOLECULAR IMMUNOLOGY

Gene expression variation in African and European populations of Drosophila melanogaster

(2008) Stephan Hutter et al.   GENOME BIOLOGY