Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding

Next-generation sequencing as a powerful motor for advances in the biological and environmental sciences

(2015) Denis Faure et al.   GENETICA

De novo transcriptome sequencing of Agropyron cristatum to identify available gene resources for the enhancement of wheat

(2015) Jinpeng Zhang et al.   GENOMICS

Development and Validation of 697 Novel Polymorphic Genomic and EST-SSR Markers in the American Cranberry (Vaccinium macrocarpon Ait.)

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Long noncoding RNA transcriptome of plants

(2015) Jun Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

The Landscape of long noncoding RNA classification

(2015) Georges St. Laurent et al.   TRENDS IN GENETICS

Characterization and Development of EST-SSRs by Deep Transcriptome Sequencing in Chinese Cabbage (Brassica rapaL. ssp.pekinensis)

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Transcriptome Profiling of Khat (Catha edulis) and Ephedra sinica Reveals Gene Candidates Potentially Involved in Amphetamine-Type Alkaloid Biosynthesis

(2015) Ryan A. Groves et al.   PLoS One

De Novo Characterization of Fall Dormant and Nondormant Alfalfa (Medicago sativa L.) Leaf Transcriptome and Identification of Candidate Genes Related to Fall Dormancy

(2015) Senhao Zhang et al.   PLoS One

Rare-Variant Association Analysis: Study Designs and Statistical Tests

(2014) Seunggeung Lee et al.   AMERICAN JOURNAL OF HUMAN GENETICS

De novo transcriptome assembly for rudimentary leaves in Litchi chinesis Sonn. and identification of differentially expressed genes in response to reactive oxygen species

(2014) Xingyu Lu et al.   BMC GENOMICS

Comparative transcriptome analysis of eggplant (Solanum melongena L.) and turkey berry (Solanum torvum Sw.): phylogenomics and disease resistance analysis

(2014) Xu Yang et al.   BMC GENOMICS

Location of chlorogenic acid biosynthesis pathway and polyphenol oxidase genes in a new interspecific anchored linkage map of eggplant

(2014) Pietro Gramazio et al.   BMC PLANT BIOLOGY

Draft Genome Sequence of Eggplant (Solanum melongena L.): the Representative Solanum Species Indigenous to the Old World

(2014) Hideki Hirakawa et al.   DNA RESEARCH

Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima/O. sativa interspecific crosses

(2014) Juan Pariasca-Tanaka et al.   EUPHYTICA

Reducing Capacity, Chlorogenic Acid Content and Biological Activity in a Collection of Scarlet (Solanum aethiopicum) and Gboma (S. macrocarpon) Eggplants

(2014) Mariola Plazas et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

First insights into the transcriptome and development of new genomic tools of a widespread circum-Mediterranean tree species,Pinus halepensisMill

(2014) S. Pinosio et al.   Molecular Ecology Resources

De Novo Assembly and Characterization of the Transcriptome of the Parasitic Weed Dodder Identifies Genes Associated with Plant Parasitism

(2014) A. Ranjan et al.   PLANT PHYSIOLOGY

Nursery and field evaluation of eggplant grafted onto unrooted cuttings of Solanum torvum Sw.

(2014) Alessandro Miceli et al.   SCIENTIA HORTICULTURAE

Ten years of next-generation sequencing technology

(2014) Erwin L. van Dijk et al.   TRENDS IN GENETICS

Conventional and phenomics characterization provides insight into the diversity and relationships of hypervariable scarlet (Solanum aethiopicum L.) and gboma (S. macrocarpon L.) eggplant complexes

(2014) Mariola Plazas et al.   Frontiers in Plant Science

Genetic diversity in morphological characters and phenolic acids content resulting from an interspecific cross between eggplant,Solanum melongena, and its wild ancestor (S. incanum)

(2013) J. Prohens et al.   ANNALS OF APPLIED BIOLOGY

Solanum torvum responses to the root-knot nematode Meloidogyne incognita

(2013) Paolo Bagnaresi et al.   BMC GENOMICS

Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq

(2013) Chad E Niederhuth et al.   BMC GENOMICS

African spinySolanum(subgenusLeptostemonum, Solanaceae): a thorny phylogenetic tangle

(2013) Maria. S. Vorontsova et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Production of interspecific hybrids between commercial cultivars of the eggplant (Solanum melongena L.) and its wild relative S. torvum

(2013) J. Kumchai et al.   GENETICS AND MOLECULAR RESEARCH

Development of 240 novel EST-SSRs in Eucalyptus L’Hérit

(2013) Changpin Zhou et al.   MOLECULAR BREEDING

Advances in plant gene-targeted and functional markers: a review

(2013) Péter Poczai et al.   Plant Methods

Wild Relatives of the Eggplant (Solanum melongena L.: Solanaceae): New Understanding of Species Names in a Complex Group

(2013) Sandra Knapp et al.   PLoS One

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes

(2012) Hamid Ashrafi et al.   BMC GENOMICS

Transcriptome analysis using next-generation sequencing

(2012) Kai-Oliver Mutz et al.   CURRENT OPINION IN BIOTECHNOLOGY

Characterization of interspecific hybrids and first backcross generations from crosses between two cultivated eggplants (Solanum melongena and S. aethiopicum Kumba group) and implications for eggplant breeding

(2012) Jaime Prohens et al.   EUPHYTICA

Phylogeographic relationships among Asian eggplants and new perspectives on eggplant domestication

(2012) Rachel S. Meyer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

Development of gene-based markers and construction of an integrated linkage map in eggplant by using Solanum orthologous (SOL) gene sets

(2012) Hiroyuki Fukuoka et al.   THEORETICAL AND APPLIED GENETICS

Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences

(2011) Juan E. Zalapa et al.   AMERICAN JOURNAL OF BOTANY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

(2011) Lorenzo Barchi et al.   BMC GENOMICS

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

(2011) José Blanca et al.   BMC GENOMICS

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

Antihyperglycemic activity and antidiabetic effect of methyl caffeate isolated from Solanum torvum Swartz. fruit in streptozotocin induced diabetic rats

(2011) Gopalsamy Rajiv Gandhi et al.   EUROPEAN JOURNAL OF PHARMACOLOGY

Development and characterization of genomic simple sequence repeat markers in eggplant and their application to the study of diversity and relationships in a collection of different cultivar types and origins

(2011) Santiago Vilanova et al.   MOLECULAR BREEDING

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Eggplant relatives as sources of variation for developing new rootstocks: Effects of grafting on eggplant yield and fruit apparent quality and composition

(2011) Carmina Gisbert et al.   SCIENTIA HORTICULTURAE

Exploitation of SSR, SRAP and CAPS-SNP markers for genetic diversity of Citrus germplasm collection

(2011) Mohamed Hamdy Amar et al.   SCIENTIA HORTICULTURAE

Asymmetric Distribution of Gene Expression in the Centromeric Region of Rice Chromosome 5

(2011) Hiroshi Mizuno et al.   Frontiers in Plant Science

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study

(2010) Jérôme Durand et al.   BMC GENOMICS

Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim

(2010) Shaohua Zeng et al.   BMC GENOMICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Characterization of Health-Related Compounds in Eggplant (Solanum melongenaL.) Lines Derived from Introgression of Allied Species

(2010) Giuseppe Mennella et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Mapping and linkage disequilibrium analysis with a genome-wide collection of SNPs that detect polymorphism in cultivated tomato

(2010) Matthew D. Robbins et al.   JOURNAL OF EXPERIMENTAL BOTANY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Protective effect of Solanum torvum on doxorubicin-induced nephrotoxicity in rats

(2009) Mahalaxmi Mohan et al.   FOOD AND CHEMICAL TOXICOLOGY

Accumulation, functional annotation, and comparative analysis of expressed sequence tags in eggplant (Solanum melongena L.), the third pole of the genus Solanum species after tomato and potato

(2009) Hiroyuki Fukuoka et al.   GENE

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology

(2009) Antonio M. Ramos et al.   PLoS One

Gene-based microsatellite development for mapping and phylogeny studies in eggplant

(2008) Anikò Stàgel et al.   BMC GENOMICS

Array-based high-throughput DNA markers for crop improvement

(2008) P K Gupta et al.   HEREDITY