Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi

Jasmonic Acid, Abscisic Acid, and Salicylic Acid Are Involved in the Phytoalexin Responses of Rice to Fusarium fujikuroi, a High Gibberellin Producer Pathogen

(2015) Ilenia Siciliano et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

FusariumPathogenomics

(2013) Li-Jun Ma et al.   Annual Review of Microbiology

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

Light affects fumonisin production in strains of Fusarium fujikuroi, Fusarium proliferatum, and Fusarium verticillioides isolated from rice

(2013) Slavica Matić et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

The role of gibberellin signalling in plant responses to abiotic stress

(2013) E. H. Colebrook et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Plant P450s as versatile drivers for evolution of species-specific chemical diversity

(2013) B. Hamberger et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Comparative Transcriptome Analysis of Two Rice Varieties in Response to Rice Stripe Virus and Small Brown Planthoppers during Early Interaction

(2013) Wenjing Zheng et al.   PLoS One

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites

(2013) Philipp Wiemann et al.   PLoS Pathogens

Conventional and real-time PCR for the identification of Fusarium fujikuroi and Fusarium proliferatum from diseased rice tissues and seeds

(2012) Maria Teresa Amatulli et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Cytochromes P450 CYP94C1 and CYP94B3 Catalyze Two Successive Oxidation Steps of Plant Hormone Jasmonoyl-isoleucine for Catabolic Turnover

(2012) Thierry Heitz et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Identification of genes required for Cf-dependent hypersensitive cell death by combined proteomic and RNA interfering analyses

(2012) Qiu-Fang Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Expression of a germin-like protein gene (CchGLP) from a geminivirus-resistant pepper (Capsicum chinense Jacq.) enhances tolerance to geminivirus infection in transgenic tobacco

(2012) L. Guevara-Olvera et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

AtMYB44regulatesWRKY70expression and modulates antagonistic interaction between salicylic acid and jasmonic acid signaling

(2012) Jae Sung Shim et al.   PLANT JOURNAL

Comparative Analysis of Zinc Finger Proteins Involved in Plant Disease Resistance

(2012) Santosh Kumar Gupta et al.   PLoS One

Length Bias Correction in Gene Ontology Enrichment Analysis Using Logistic Regression

(2012) Gu Mi et al.   PLoS One

Comparative Transcriptome Profiling of the Early Response to Magnaporthe oryzae in Durable Resistant vs Susceptible Rice (Oryza sativa L.) Genotypes

(2012) Paolo Bagnaresi et al.   PLoS One

Simultaneous RNA-Seq Analysis of a Mixed Transcriptome of Rice and Blast Fungus Interaction

(2012) Yoshihiro Kawahara et al.   PLoS One

The Molecular Mechanism and Evolution of the GA–GID1–DELLA Signaling Module in Plants

(2011) Tai-ping Sun   CURRENT BIOLOGY

A CCCH-Type Zinc Finger Nucleic Acid-Binding Protein Quantitatively Confers Resistance against Rice Bacterial Blight Disease

(2011) H. Deng et al.   PLANT PHYSIOLOGY

Phytoalexins in defense against pathogens

(2011) Ishita Ahuja et al.   TRENDS IN PLANT SCIENCE

A rice fungal MAMP-responsive MAPK cascade regulates metabolic flow to antimicrobial metabolite synthesis

(2010) Mitsuko Kishi-Kaboshi et al.   PLANT JOURNAL

Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice

(2010) Takeo Shimizu et al.   PLANT JOURNAL

Molecular identification of Fusarium spp. associated with bakanae disease of rice in Italy and assessment of their pathogenicity

(2010) M. T. Amatulli et al.   PLANT PATHOLOGY

WRKY transcription factors

(2010) Paul J. Rushton et al.   TRENDS IN PLANT SCIENCE

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Meta-analysis of transcripts associated with race-specific resistance to stripe rust in wheat demonstrates common induction of blue copper-binding protein, heat-stress transcription factor, pathogen-induced WIR1A protein, and ent-kaurene synthase transcripts

(2009) Tristan E. Coram et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Heat Shock Factors HsfB1 and HsfB2b Are Involved in the Regulation of Pdf1.2 Expression and Pathogen Resistance in Arabidopsis

(2009) Mukesh Kumar et al.   Molecular Plant

Weights in the Balance: Jasmonic Acid and Salicylic Acid Signaling in Root-Biotroph Interactions

(2009) Caroline Gutjahr et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Enzymes in jasmonate biosynthesis – Structure, function, regulation

(2009) Andreas Schaller et al.   PHYTOCHEMISTRY

Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180)

(2008) Ichiro Mitsuhara et al.   MOLECULAR GENETICS AND GENOMICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Population Structure of Fusarium fujikuroi from California Rice and Water Grass

(2008) L. L. A. Carter et al.   PHYTOPATHOLOGY

Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses

(2008) Huizhi Liu et al.   PLANT MOLECULAR BIOLOGY

A Germin-Like Protein Gene Family Functions as a Complex Quantitative Trait Locus Conferring Broad-Spectrum Disease Resistance in Rice

(2008) P. M. Manosalva et al.   PLANT PHYSIOLOGY