Large-scale gene co-expression network as a source of functional annotation for cattle genes

Functional crosstalk between membrane lipids and TLR biology

(2016) Marielle S Köberlin et al.   CURRENT OPINION IN CELL BIOLOGY

Wingless-type MMTV integration site family member 2(WNT2) gene is associated with resistance to MAP in faecal culture and antibody response in Holstein cattle

(2015) A. Pauciullo et al.   ANIMAL GENETICS

The Transcriptome Signature of the Receptive Bovine Uterus Determined at Early Gestation

(2015) Mario Binelli et al.   PLoS One

Ruminal Transcriptomic Analysis of Grass-Fed and Grain-Fed Angus Beef Cattle

(2015) Yaokun Li et al.   PLoS One

Increased signaling entropy in cancer requires the scale-free property of protein interaction networks

(2015) Andrew E. Teschendorff et al.   Scientific Reports

FastRFunctions for Robust Correlations and Hierarchical Clustering

(2015) Peter Langfelder et al.   Journal of Statistical Software

Dominant Red Coat Color in Holstein Cattle Is Associated with a Missense Mutation in the Coatomer Protein Complex, Subunit Alpha (COPA) Gene

(2015) Ben Dorshorst et al.   PLoS One

Visual gene-network analysis reveals the cancer gene co-expression in human endometrial cancer

(2014) Wei-Chun Chou et al.   BMC GENOMICS

Co-Expression Analysis of Fetal Weight-Related Genes in Ovine Skeletal Muscle during Mid and Late Fetal Development Stages

(2014) Lingyang Xu et al.   International Journal of Biological Sciences

3Cpro of Foot-and-Mouth Disease Virus Antagonizes the Interferon Signaling Pathway by Blocking STAT1/STAT2 Nuclear Translocation

(2014) Y. Du et al.   JOURNAL OF VIROLOGY

Expression of Porcine Fusion Protein IRF7/3(5D) Efficiently Controls Foot-and-Mouth Disease Virus Replication

(2014) L. Ramirez-Carvajal et al.   JOURNAL OF VIROLOGY

The GOA database: Gene Ontology annotation updates for 2015

(2014) Rachael P. Huntley et al.   NUCLEIC ACIDS RESEARCH

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

ArrayExpress update—simplifying data submissions

(2014) Nikolay Kolesnikov et al.   NUCLEIC ACIDS RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Ovarian steroids do not affect bovine endometrial cytokine or chemokine responses to Escherichia coli or LPS in vitro

(2014) João P E Saut et al.   REPRODUCTION

Genetic architecture of gene expression in the chicken

(2013) Dragana Stanley et al.   BMC GENOMICS

Correlating transcriptional networks to breast cancer survival: a large-scale coexpression analysis

(2013) Colin Clarke et al.   CARCINOGENESIS

Zebrafish ISG15 Exerts a Strong Antiviral Activity against RNA and DNA Viruses and Regulates the Interferon Response

(2013) C. Langevin et al.   JOURNAL OF VIROLOGY

RefSeq: an update on mammalian reference sequences

(2013) Kim D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

The Reactome pathway knowledgebase

(2013) David Croft et al.   NUCLEIC ACIDS RESEARCH

Massive Human Co-Expression Network and Its Medical Applications

(2012) Yaping Feng et al.   CHEMISTRY & BIODIVERSITY

Identification of E2F target genes that are rate limiting for dE2F1-dependent cell proliferation

(2012) Anabel Herr et al.   DEVELOPMENTAL DYNAMICS

Identification of Candidate Genes related to Bovine Marbling using Protein-Protein Interaction Networks

(2012) Dajeong Lim et al.   International Journal of Biological Sciences

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Evidence for an early endometrial response to pregnancy in cattle: both dependent upon and independent of interferon tau

(2012) N. Forde et al.   PHYSIOLOGICAL GENOMICS

HERC6 Is the Main E3 Ligase for Global ISG15 Conjugation in Mouse Cells

(2012) Diede Oudshoorn et al.   PLoS One

A General G1/S-Phase Cell-Cycle Control Module in the Flowering Plant Arabidopsis thaliana

(2012) Xin'Ai Zhao et al.   PLoS Genetics

Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle

(2011) Quan Gu et al.   BMC GENOMICS

Regulation patterns in signaling networks of cancer

(2011) Gunnar Schramm et al.   BMC Systems Biology

From genotype to phenotype in bovine functional genomics

(2011) C. S. Pareek et al.   Briefings in Functional Genomics

IRF7: activation, regulation, modification and function

(2011) S Ning et al.   GENES AND IMMUNITY

Telomere dysfunction induces metabolic and mitochondrial compromise

(2011) Ergün Sahin et al.   NATURE

Gene Coexpression Network Analysis as a Source of Functional Annotation for Rice Genes

(2011) Kevin L. Childs et al.   PLoS One

UniProt Knowledgebase: a hub of integrated protein data

(2011) M. Magrane et al.   Database-The Journal of Biological Databases and Curation

Cytokines in dermatology - A basic overview

(2011) Arijit Coondoo   INDIAN JOURNAL OF DERMATOLOGY

Emerging Role of ISG15 in Antiviral Immunity

(2010) Brian Skaug et al.   CELL

Weighted Gene Coexpression Network Analysis: State of the Art

(2010) Wei Zhao et al.   Journal of Biopharmaceutical Statistics

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

Arabidopsis gene co-expression network and its functional modules

(2009) Linyong Mao et al.   BMC BIOINFORMATICS

Calprotectin S100A9 Calcium-binding Loops I and II Are Essential for Keratinocyte Resistance to Bacterial Invasion

(2009) Chantrakorn Champaiboon et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

(2009) et al.   SCIENCE

Regulation of Innate Immune Responses by Bovine Herpesvirus 1 and Infected Cell Protein 0 (bICP0)

(2009) Clinton Jones   Viruses-Basel

arrayQualityMetrics—a bioconductor package for quality assessment of microarray data

(2008) Audrey Kauffmann et al.   BIOINFORMATICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS