Analysis of ethanol fermentation mechanism of ethanol producing white-rot fungus Phlebia sp. MG-60 by RNA-seq

Improvement of ethanol production by recombinant expression of pyruvate decarboxylase in the white-rot fungus Phanerochaete sordida YK-624

(2016) Jianqiao Wang et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Examining the Role of Membrane Lipid Composition in Determining the Ethanol Tolerance of Saccharomyces cerevisiae

(2014) Clark M. Henderson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads

(2014) Y. Xie et al.   BIOINFORMATICS

Effect of chemical factors on integrated fungal fermentation of sugarcane bagasse for ethanol production by a white-rot fungus, Phlebia sp. MG-60

(2014) Le Duy Khuong et al.   BIORESOURCE TECHNOLOGY

Improvement of ligninolytic properties by recombinant expression of glyoxal oxidase gene in hyper lignin-degrading fungusPhanerochaete sordidaYK-624

(2014) Yuto Yamada et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

A review of biological delignification and detoxification methods for lignocellulosic bioethanol production

(2014) Antonio D. Moreno et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Draft genome sequences of threeHolosporaspecies (Holospora obtusa,Holospora undulata, andHolospora elegans), endonuclear symbiotic bacteria of the ciliateParamecium caudatum

(2014) Hideo Dohra et al.   FEMS MICROBIOLOGY LETTERS

Plant-Polysaccharide-Degrading Enzymes from Basidiomycetes

(2014) Johanna Rytioja et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Bioconversion of xylose, hexoses and biomass to ethanol by a new isolate of the white rot basidiomycete Trametes versicolor

(2014) Kenji Okamoto et al.   SpringerPlus

Expression of a manganese peroxidase isozyme 2 transgene in the ethanologenic white rot fungus Phlebia sp. strain MG-60

(2014) Yumi Yamasaki et al.   SpringerPlus

Phylogenetic and phylogenomic overview of the Polyporales

(2013) Manfred Binder et al.   MYCOLOGIA

Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes

(2013) Francisco J. Ruiz-Dueñas et al.   MYCOLOGIA

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Insights from the Fungus Fusarium oxysporum Point to High Affinity Glucose Transporters as Targets for Enhancing Ethanol Production from Lignocellulose

(2013) Shahin S. Ali et al.   PLoS One

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Integrated delignification and simultaneous saccharification and fermentation of hard wood by a white-rot fungus, Phlebia sp. MG-60

(2012) Ichiro Kamei et al.   BIORESOURCE TECHNOLOGY

Direct ethanol production from cellulosic materials by the hypersaline-tolerant white-rot fungus Phlebia sp. MG-60

(2012) Ichiro Kamei et al.   BIORESOURCE TECHNOLOGY

A molecular transporter engineering approach to improving xylose catabolism in Saccharomyces cerevisiae

(2012) Eric M. Young et al.   METABOLIC ENGINEERING

Effectiveness of microbial pretreatment by Ceriporiopsis subvermispora on different biomass feedstocks

(2011) Caixia Wan et al.   BIORESOURCE TECHNOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

PATRIC: the Comprehensive Bacterial Bioinformatics Resource with a Focus on Human Pathogenic Species

(2011) Joseph J. Gillespie et al.   INFECTION AND IMMUNITY

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Validation of internal control genes for quantitative gene expression studies in chickpea (Cicer arietinum L.)

(2010) Rohini Garg et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Production of ethanol by the white-rot basidiomycetes Peniophora cinerea and Trametes suaveolens

(2010) Kenji Okamoto et al.   BIOTECHNOLOGY LETTERS

Direct ethanol production from starch, wheat bran and rice straw by the white rot fungus Trametes hirsuta

(2010) Kenji Okamoto et al.   ENZYME AND MICROBIAL TECHNOLOGY

Lignin-modifying enzymes in filamentous basidiomycetes - ecological, functional and phylogenetic review

(2010) Taina K. Lundell et al.   JOURNAL OF BASIC MICROBIOLOGY

Identification and Overexpression of a Bifunctional Aldehyde/Alcohol Dehydrogenase Responsible for Ethanol Production in Thermoanaerobacter mathranii

(2010) Shuo Yao et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

De novo assembly and analysis of RNA-seq data

(2010) Gordon Robertson et al.   NATURE METHODS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Sulfite pretreatment to overcome recalcitrance of lignocellulose (SPORL) for robust enzymatic saccharification of hardwoods

(2009) G. S. Wang et al.   BIOTECHNOLOGY PROGRESS

Yeast metabolic engineering for hemicellulosic ethanol production

(2009) JH Van Vleet et al.   CURRENT OPINION IN BIOTECHNOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Ethanol fermentation technologies from sugar and starch feedstocks

(2007) F.W. Bai et al.   BIOTECHNOLOGY ADVANCES