Establishing gene models from the Pinus pinaster genome using gene capture and BAC sequencing

Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size

(2014) Juliana Stival Sena et al.   BMC PLANT BIOLOGY

Selection of haploid cell lines from megagametophyte cultures of maritime pine as a DNA source for massive sequencing of the species

(2014) I. Arrillaga et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Insights into Conifer Giga-Genomes

(2014) A. R. De La Torre et al.   PLANT PHYSIOLOGY

Transcriptome analysis in maritime pine using laser capture microdissection and 454 pyrosequencing

(2014) R. A. Canas et al.   TREE PHYSIOLOGY

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

(2013) Inanc Birol et al.   BIOINFORMATICS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

De novoassembly of maritime pine transcriptome: implications for forest breeding and biotechnology

(2013) Javier Canales et al.   PLANT BIOTECHNOLOGY JOURNAL

Barley whole exome capture: a tool for genomic research in the genusHordeumand beyond

(2013) Martin Mascher et al.   PLANT JOURNAL

Whole-exome targeted sequencing of the uncharacterized pine genome

(2013) Leandro G. Neves et al.   PLANT JOURNAL

A Myb transcription factor regulates genes of the phenylalanine pathway in maritime pine

(2013) Blanca Craven-Bartle et al.   PLANT JOURNAL

Insights into the Loblolly Pine Genome: Characterization of BAC and Fosmid Sequences

(2013) Jill L. Wegrzyn et al.   PLoS One

Applications of targeted gene capture and next-generation sequencing technologies in studies of human deafness and other genetic disabilities

(2012) Xi Lin et al.   HEARING RESEARCH

Towards decoding the conifer giga-genome

(2012) John Mackay et al.   PLANT MOLECULAR BIOLOGY

Novel Insights into Regulation of Asparagine Synthetase in Conifers

(2012) Javier Canales et al.   Frontiers in Plant Science

Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

(2011) Patricia Faivre Rampant et al.   BMC GENOMICS

Exome sequencing as a tool for Mendelian disease gene discovery

(2011) Michael J. Bamshad et al.   NATURE REVIEWS GENETICS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Adventures in the Enormous: A 1.8 Million Clone BAC Library for the 21.7 Gb Genome of Loblolly Pine

(2011) Zenaida V. Magbanua et al.   PLoS One

SeqTrim: a high-throughput pipeline for preprocessing any type of sequence reads

(2010) Juan Falgueras et al.   BMC BIOINFORMATICS

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

(2010) Allen Kovach et al.   BMC GENOMICS

Target-enrichment strategies for next-generation sequencing

(2010) Lira Mamanova et al.   NATURE METHODS

Biological functions of asparagine synthetase in plants

(2010) Laure Gaufichon et al.   PLANT SCIENCE

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Targeted capture and massively parallel sequencing of 12 human exomes

(2009) Sarah B. Ng et al.   NATURE

Nitrogen metabolism in the developing ear of maize (Zea mays): analysis of two lines contrasting in their mode of nitrogen management

(2009) Rafael A. Cañas et al.   NEW PHYTOLOGIST

Evolution of Genome Size and Complexity in Pinus

(2009) Alison M. Morse et al.   PLoS One

Genetic diagnosis by whole exome capture and massively parallel DNA sequencing

(2009) Murim Choi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The GOA database in 2009--an integrated Gene Ontology Annotation resource

(2008) D. Barrell et al.   NUCLEIC ACIDS RESEARCH