Estimates of allele-specific expression in Drosophila with a single genome sequence and RNA-seq data
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Title
Estimates of allele-specific expression in Drosophila with a single genome sequence and RNA-seq data
Authors
Keywords
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Journal
BIOINFORMATICS
Volume 30, Issue 18, Pages 2603-2610
Publisher
Oxford University Press (OUP)
Online
2014-05-21
DOI
10.1093/bioinformatics/btu342
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Note: Only part of the references are listed.- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
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- (2013) Kraig R Stevenson et al. BMC GENOMICS
- Allelic imbalance metre (Allim), a new tool for measuring allele-specific gene expression with RNA-seq data
- (2013) Ram Vinay Pandey et al. Molecular Ecology Resources
- Allelic Imbalance in Drosophila Hybrid Heads: Exons, Isoforms, and Evolution
- (2012) R. M. Graze et al. MOLECULAR BIOLOGY AND EVOLUTION
- The Drosophila melanogaster Genetic Reference Panel
- (2012) Trudy F. C. Mackay et al. NATURE
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- A new strategy to reduce allelic bias in RNA-Seq readmapping
- (2012) Ravi Vijaya Satya et al. NUCLEIC ACIDS RESEARCH
- Genomic Imprinting Absent in Drosophila melanogaster Adult Females
- (2012) Joseph D. Coolon et al. Cell Reports
- Genomic Variation and Its Impact on Gene Expression in Drosophila melanogaster
- (2012) Andreas Massouras et al. PLoS Genetics
- Accurate identification of A-to-I RNA editing in human by transcriptome sequencing
- (2011) J. H. Bahn et al. GENOME RESEARCH
- Systematic Detection of Polygenic cis-Regulatory Evolution
- (2011) Hunter B. Fraser et al. PLoS Genetics
- Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads
- (2011) Ernest Turro et al. GENOME BIOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation
- (2010) Tomas Babak et al. BMC GENOMICS
- Regulatory divergence in Drosophila revealed by mRNA-seq
- (2010) C. J. McManus et al. GENOME RESEARCH
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Polygenic and directional regulatory evolution across pathways in Saccharomyces
- (2010) J. H. Bullard et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
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- VarScan: variant detection in massively parallel sequencing of individual and pooled samples
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- (2008) V. Bansal et al. BIOINFORMATICS
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- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
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