Transcriptome adaptation of the bovine mammary gland to diets rich in unsaturated fatty acids shows greater impact of linseed oil over safflower oil on gene expression and metabolic pathways

Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil

(2015) Ran Li et al.   BMC GENOMICS

Experimental validation of methods for differential gene expression analysis and sample pooling in RNA-seq

(2015) Anto P. Rajkumar et al.   BMC GENOMICS

Short communication: Milk fat depression induced by conjugated linoleic acid and a high-oil and low-fiber diet occurs equally across the day in Holstein cows

(2015) L. Ma et al.   JOURNAL OF DAIRY SCIENCE

Fat and starch as additive risk factors for milk fat depression in dairy diets containing corn dried distillers grains with solubles

(2015) H.A. Ramirez Ramirez et al.   JOURNAL OF DAIRY SCIENCE

Emerging Nutrition Science on Fatty Acids and Cardiovascular Disease: Nutritionists' Perspectives

(2015) Penny M Kris-Etherton et al.   Advances in Nutrition

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Transcriptional profiling of mammary gland in Holstein cows with extremely different milk protein and fat percentage using RNA sequencing

(2014) Xiaogang Cui et al.   BMC GENOMICS

Function of SREBP1 in the Milk Fat Synthesis of Dairy Cow Mammary Epithelial Cells

(2014) Nan Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The effect of rumen digesta inoculation on the time course of recovery from classical diet-induced milk fat depression in dairy cows

(2014) D.E. Rico et al.   JOURNAL OF DAIRY SCIENCE

Effect of monensin on recovery from diet-induced milk fat depression

(2014) D.E. Rico et al.   JOURNAL OF DAIRY SCIENCE

Lipid Feeding and Milk Fat Depression

(2014) Thomas C. Jenkins et al.   VETERINARY CLINICS OF NORTH AMERICA-FOOD ANIMAL PRACTICE

Comparison of five different RNA sources to examine the lactating bovine mammary gland transcriptome using RNA-Sequencing

(2014) Angela Cánovas et al.   Scientific Reports

Genome wide association studies for body conformation traits in the Chinese Holstein cattle population

(2013) Xiaoping Wu et al.   BMC GENOMICS

UCP2, a mitochondrial protein regulated at multiple levels

(2013) Massimo Donadelli et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Dietary effects of linseed on fatty acid composition of milk and on liver, adipose and mammary gland metabolism of periparturient dairy cows

(2013) N. Mach et al.   JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION

Krüppel-like Factor 11 Regulates the Expression of Metabolic Genes via an Evolutionarily Conserved Protein Interaction Domain Functionally Disrupted in Maturity Onset Diabetes of the Young

(2013) Gwen Lomberk et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Saturated fatty acids activate ERK signaling to downregulate hepatic sortilin 1 in obese and diabetic mice

(2013) Lipeng Bi et al.   JOURNAL OF LIPID RESEARCH

Transcriptional profiling of bovine milk using RNA sequencing

(2012) Saumya Wickramasinghe et al.   BMC GENOMICS

The Role of Liver Fructose-1,6-Bisphosphatase in Regulating Appetite and Adiposity

(2012) Sherley Visinoni et al.   DIABETES

Adipose tissue angiopoietin-like protein 4 messenger RNA changes with altered energy balance in lactating Holstein cows

(2012) D.A. Koltes et al.   DOMESTIC ANIMAL ENDOCRINOLOGY

Transcriptional regulation of lipid synthesis in bovine mammary epithelial cells by sterol regulatory element binding protein-1

(2012) L. Ma et al.   JOURNAL OF DAIRY SCIENCE

Supplementation of increasing amounts of linseed oil to dairy cows fed total mixed rations: Effects on digestion, ruminal fermentation characteristics, protozoal populations, and milk fatty acid composition

(2012) C. Benchaar et al.   JOURNAL OF DAIRY SCIENCE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Old and New Stories: Revelations from Functional Analysis of the Bovine Mammary Transcriptome during the Lactation Cycle

(2012) Massimo Bionaz et al.   PLoS One

Alteration of gene expression in mammary gland tissue of dairy cows in response to dietary unsaturated fatty acids

(2011) N. Mach et al.   Animal

Dietary fatty acids and cardiovascular disease

(2011) A. M. Salter   Animal

Effects of long-term supplementation of dairy cow diets with rumen-protected conjugated linoleic acids (CLA) on performance, metabolic parameters and fatty acid profile in milk fat

(2011) Julia Pappritz et al.   ARCHIVES OF ANIMAL NUTRITION

Enzymatic properties of ALDH1L2, a mitochondrial 10-formyltetrahydrofolate dehydrogenase

(2011) Kyle C. Strickland et al.   CHEMICO-BIOLOGICAL INTERACTIONS

Erk regulation of pyruvate dehydrogenase flux through PDK4 modulates cell proliferation

(2011) A. R. Grassian et al.   GENES & DEVELOPMENT

Association of bovine CD4 and STAT5b single nucleotide polymorphisms with somatic cell scores and milk production traits in Chinese Holsteins

(2011) Yanghua He et al.   JOURNAL OF DAIRY RESEARCH

Effects of feeding rapeseed oil, soybean oil, or linseed oil on stearoyl-CoA desaturase expression in the mammary gland of dairy cows

(2011) A.A.A. Jacobs et al.   JOURNAL OF DAIRY SCIENCE

Biohydrogenation of Linolenic Acid to Stearic Acid by the Rumen Microbial Population Yields Multiple Intermediate Conjugated Diene Isomers

(2011) Yong-Jae Lee et al.   JOURNAL OF NUTRITION

Role of trans fatty acids in the nutritional regulation of mammary lipogenesis in ruminants

(2010) K. J. Shingfield et al.   Animal

Sustained upregulation of stearoyl-CoA desaturase in bovine mammary tissue with contrasting changes in milk fat synthesis and lipogenic gene networks caused by lipid supplements

(2010) Guido Invernizzi et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The acute-phase protein serum amyloid A3 is expressed in the bovine mammary gland and plays a role in host defence

(2009) Adrian J. Molenaar et al.   BIOMARKERS

A whole genome scan to map QTL for milk production traits and somatic cell score in Canadian Holstein bulls

(2009) D. Kolbehdari et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Tissue expression of angiopoietin-like protein 4 in cattle1

(2009) L. K. Mamedova et al.   JOURNAL OF ANIMAL SCIENCE

Genetic polymorphism of STAT5A protein: relationships with production traits and milk composition in Italian Brown cattle

(2009) Maria Selvaggi et al.   JOURNAL OF DAIRY RESEARCH

Whole intact rapeseeds or sunflower oil in high-forage or high-concentrate diets affects milk yield, milk composition, and mammary gene expression profile in goats

(2009) S. Ollier et al.   JOURNAL OF DAIRY SCIENCE

Peroxisome proliferator-activated receptor-γ activation and long-chain fatty acids alter lipogenic gene networks in bovine mammary epithelial cells to various extents

(2009) A.K.G. Kadegowda et al.   JOURNAL OF DAIRY SCIENCE

Expression of Enzymes and Key Regulators of Lipid Synthesis Is Upregulated in Adipose Tissue during CLA-Induced Milk Fat Depression in Dairy Cows

(2009) Kevin J. Harvatine et al.   JOURNAL OF NUTRITION

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

(2009) et al.   SCIENCE

Regulation of uncoupling protein 2 expression by long-chain fatty acids and hormones in bovine mammary epithelial cells

(2008) Tomo Yonezawa et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Gene networks driving bovine milk fat synthesis during the lactation cycle

(2008) Massimo Bionaz et al.   BMC GENOMICS

Onset of lactation in the bovine mammary gland: gene expression profiling indicates a strong inhibition of gene expression in cell proliferation

(2008) Kiera A. Finucane et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Methane output and diet digestibility in response to feeding dairy cows crude linseed, extruded linseed, or linseed oil1

(2008) C. Martin et al.   JOURNAL OF ANIMAL SCIENCE

Mutations in the STAT5A Gene Are Associated with Embryonic Survival and Milk Composition in Cattle

(2008) H. Khatib et al.   JOURNAL OF DAIRY SCIENCE

Altered Metabolism of Growth Hormone Receptor Mutant Mice: A Combined NMR Metabonomics and Microarray Study

(2008) Horst Joachim Schirra et al.   PLoS One

BOARD-INVITED REVIEW: Recent advances in biohydrogenation of unsaturated fatty acids within the rumen microbial ecosystem1

(2007) T. C. Jenkins et al.   JOURNAL OF ANIMAL SCIENCE