De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia

Characterization of novel SSR markers in diverse sainfoin (Onobrychis viciifolia) germplasm

(2016) Katharina Kempf et al.   BMC GENETICS

Large Variability of Proanthocyanidin Content and Composition in Sainfoin (Onobrychis viciifolia)

(2015) Carsten S. Malisch et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement

(2015) Jose J. De Vega et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification

(2014) Steven A Yates et al.   BMC GENOMICS

Achievements and Challenges in Improving Temperate Perennial Forage Legumes

(2014) Paolo Annicchiarico et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Potential of legume-based grassland-livestock systems in Europe: a review

(2014) A. Lüscher et al.   GRASS AND FORAGE SCIENCE

Genomic prediction of trait segregation in a progeny population: a case study of Japanese pear (Pyrus pyrifolia)

(2013) Hiroyoshi Iwata et al.   BMC GENETICS

Analysis and annotation of the hexaploid oat seed transcriptome

(2013) Juan J Gutierrez-Gonzalez et al.   BMC GENOMICS

Cytological characterisation of the underutilized forage crop Onobrychis viciifolia Scop. and other members of the Onobrychis genus

(2013) Christine Hayot Carbonero et al.   GENETIC RESOURCES AND CROP EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data

(2013) MARC LOHSE et al.   PLANT CELL AND ENVIRONMENT

The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity

(2013) Kazuki Saito et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

A phylogenetic analysis of genus Onobrychis and its relationships within the tribe Hedysareae (Fabaceae)

(2013) Nadeesha LEWKE BANDARA et al.   TURKISH JOURNAL OF BOTANY

Polyphenol metabolism provides a screening tool for beneficial effects of Onobrychis viciifolia (sainfoin)

(2012) Jana Thill et al.   PHYTOCHEMISTRY

Proanthocyanidin diversity in the EU ‘HealthyHay’ sainfoin (Onobrychis viciifolia) germplasm collection

(2012) Elisabetta Stringano et al.   PHYTOCHEMISTRY

The Rules of Engagement in the Legume-Rhizobial Symbiosis

(2011) Giles E.D. Oldroyd et al.   Annual Review of Genetics

Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

(2011) S Samuel Yang et al.   BMC GENOMICS

EST-SSR cross-amplification and genetic similarity in Onobrychis genus

(2011) Samir Demdoum et al.   GENETIC RESOURCES AND CROP EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq

(2010) V. M. Bruno et al.   GENOME RESEARCH

Distribution and biosynthesis of flavan-3-ols in Camellia sinensis seedlings and expression of genes encoding biosynthetic enzymes

(2010) Hiroshi Ashihara et al.   PHYTOCHEMISTRY

Comparative analysis of drought-responsive transcriptome in Indica rice genotypes with contrasting drought tolerance

(2010) Sangram K. Lenka et al.   PLANT BIOTECHNOLOGY JOURNAL

Shotguns and SNPs: how fast and cheap sequencing is revolutionizing plant biology

(2010) Steven D. Rounsley et al.   PLANT JOURNAL

RNA-seq: from technology to biology

(2009) Samuel Marguerat et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

BatchPrimer3: A high throughput web application for PCR and sequencing primer design

(2008) Frank M You et al.   BMC BIOINFORMATICS

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Biosynthesis and Genetic Regulation of Proanthocyanidins in Plants

(2008) Fei He et al.   MOLECULES