Positive selection on panpulmonate mitogenomes provide new clues on adaptations to terrestrial life

Molecular phylogeny of the Ellobiidae (Gastropoda: Panpulmonata) supports independent terrestrial invasions

(2016) Pedro E. Romero et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Sea-slug invasion of the land

(2015) Yasunori Kano et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The rate of adaptive evolution in animal mitochondria

(2015) Jennifer E. James et al.   MOLECULAR ECOLOGY

Collembolan Transcriptomes Highlight Molecular Evolution of Hexapods and Provide Clues on the Adaptation to Terrestrial Life

(2015) A. Faddeeva et al.   PLoS One

Initial Evidence for Adaptive Selection on the NADH Subunit Two of Freshwater Dolphins by Analyses of Mitochondrial Genomes

(2015) Susana Caballero et al.   PLoS One

Selecting optimal partitioning schemes for phylogenomic datasets

(2014) Robert Lanfear et al.   BMC EVOLUTIONARY BIOLOGY

Misperceived invasion: the Lusitanian slug (Arion lusitanicusauct. non-Mabille orArion vulgarisMoquin-Tandon 1855) is native to Central Europe

(2014) Markus Pfenninger et al.   Evolutionary Applications

Control Region Length Dynamics Potentially Drives Amino Acid Evolution in Tarsier Mitochondrial Genomes

(2014) Stefan Merker et al.   JOURNAL OF MOLECULAR EVOLUTION

Physella acuta: atypical mitochondrial gene order among panpulmonates (Gastropoda)

(2014) Journey R. Nolan et al.   JOURNAL OF MOLLUSCAN STUDIES

Review and meta-analysis of natural selection in mitochondrial complex I in metazoans

(2014) Michael R. Garvin et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Phylogenomic analyses of deep gastropod relationships reject Orthogastropoda

(2014) F. Zapata et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Parallel evolution of cox genes in H2S-tolerant fish as key adaptation to a toxic environment

(2014) Markus Pfenninger et al.   Nature Communications

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

(2014) Camille Berthelot et al.   Nature Communications

Desiccation stress in intertidal seaweeds: Effects on morphology, antioxidant responses and photosynthetic performance

(2013) María R. Flores-Molina et al.   AQUATIC BOTANY

The complete mitochondrial genome of a turbinid vetigastropod from MiSeq Illumina sequencing of genomic DNA and steps towards a resolved gastropod phylogeny

(2013) S.T. Williams et al.   GENE

Coelacanth genomes reveal signatures for evolutionary transition from water to land

(2013) M. Nikaido et al.   GENOME RESEARCH

The Branch-Site Test of Positive Selection Is Surprisingly Robust but Lacks Power under Synonymous Substitution Saturation and Variation in GC

(2013) Walid H. Gharib et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomics supports Panpulmonata: Opisthobranch paraphyly and key evolutionary steps in a major radiation of gastropod molluscs

(2013) Kevin M. Kocot et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The African coelacanth genome provides insights into tetrapod evolution

(2013) Chris T. Amemiya et al.   NATURE

Flashback and foreshadowing—a review of the taxon Opisthobranchia

(2013) Heike Wägele et al.   ORGANISMS DIVERSITY & EVOLUTION

Animal Mitochondria, Positive Selection and Cyto-Nuclear Coevolution: Insights from Pulmonates

(2013) Aristeidis Parmakelis et al.   PLoS One

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Looking for Darwin in Genomic Sequences—Validity and Success of Statistical Methods

(2012) Weiwei Zhai et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitogenomics does not resolve deep molluscan relationships (yet?)

(2012) I. Stöger et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Adaptive signals in algal Rubisco reveal a history of ancient atmospheric carbon dioxide

(2012) J. N. Young et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Terrestrial invasion of pomatiopsid gastropods in the heavy-snow region of the Japanese Archipelago

(2011) Yuichi Kameda et al.   BMC EVOLUTIONARY BIOLOGY

Ten new complete mitochondrial genomes of pulmonates (Mollusca: Gastropoda) and their impact on phylogenetic relationships

(2011) Tracy R White et al.   BMC EVOLUTIONARY BIOLOGY

Crawling through time: Transition of snails to slugs dating back to the Paleozoic, based on mitochondrial phylogenomics

(2011) Mónica Medina et al.   Marine Genomics

Radiation and Functional Diversification of Alpha Keratins during Early Vertebrate Evolution

(2011) W. Vandebergh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of mitochondrial genomes in subterranean caviomorph rodents: Adaptation against a background of purifying selection

(2011) Ivanna H. Tomasco et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic relationships and evolution of pulmonate gastropods (Mollusca): New insights from increased taxon sampling

(2011) Benoît Dayrat et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Positive Darwinian Selection in the Piston That Powers Proton Pumps in Complex I of the Mitochondria of Pacific Salmon

(2011) Michael R. Garvin et al.   PLoS One

Rise of the Earliest Tetrapods: An Early Devonian Origin from Marine Environment

(2011) David George et al.   PLoS One

Reconstructing the evolutionary history of the radiation of the land snail genus Xerocrassa on Crete based on mitochondrial sequences and AFLP markers

(2010) Jan Sauer et al.   BMC EVOLUTIONARY BIOLOGY

On the origin of Acochlidia and other enigmatic euthyneuran gastropods, with implications for the systematics of Heterobranchia

(2010) Katharina M Jörger et al.   BMC EVOLUTIONARY BIOLOGY

Statistical Properties of the Branch-Site Test of Positive Selection

(2010) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

A new approach to an old conundrum-DNA barcoding sheds new light on phenotypic plasticity and morphological stasis in microsnails (Gastropoda, Pulmonata, Carychiidae)

(2010) ALEXANDER M. WEIGAND et al.   Molecular Ecology Resources

The complete mitochondrial genome of Radix balthica (Pulmonata, Basommatophora), obtained by low coverage shot gun next generation sequencing

(2010) B. Feldmeyer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

Adaptive evolution of energy metabolism genes and the origin of flight in bats

(2010) Y.-Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A species delimitation approach in the Trochulus sericeus/hispidus complex reveals two cryptic species within a sharp contact zone

(2009) Aline Dépraz et al.   BMC EVOLUTIONARY BIOLOGY

Out of Antarctica? – New insights into the phylogeny and biogeography of the Pleurobranchomorpha (Mollusca, Gastropoda)

(2009) Katrin Göbbeler et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evolutionary Pressure on Mitochondrial Cytochrome b Is Consistent with a Role of CytbI7T Affecting Longevity during Caloric Restriction

(2009) Wesley A. Beckstead et al.   PLoS One

Evolution of gastropod mitochondrial genome arrangements

(2008) Cristina Grande et al.   BMC EVOLUTIONARY BIOLOGY

From sea to land and beyond – New insights into the evolution of euthyneuran Gastropoda (Mollusca)

(2008) Annette Klussmann-Kolb et al.   BMC EVOLUTIONARY BIOLOGY

The adaptive evolution of the mammalian mitochondrial genome

(2008) Rute R da Fonseca et al.   BMC GENOMICS

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY