Close ecological relationship among species facilitated horizontal transfer of retrotransposons

Review of current disease threats for cultivated penaeid shrimp in Asia

(2016) Siripong Thitamadee et al.   AQUACULTURE

Tree of Life Reveals Clock-Like Speciation and Diversification

(2015) S. Blair Hedges et al.   MOLECULAR BIOLOGY AND EVOLUTION

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The promotion of cytoskeleton integration and redox in the haemocyte of shrimp Litopenaeus vannamei after the successive stimulation of recombinant VP28

(2014) Lingling Wang et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Widespread and frequent horizontal transfers of transposable elements in plants

(2014) M. El Baidouri et al.   GENOME RESEARCH

Transcriptome analysis of eyestalk and hemocytes in the ridgetail white prawn Exopalaemon carinicauda: assembly, Annotation and Marker Discovery

(2014) Jitao Li et al.   MOLECULAR BIOLOGY REPORTS

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

In-Depth Transcriptome Analysis of the Red Swamp Crayfish Procambarus clarkii

(2014) Huaishun Shen et al.   PLoS One

Domesticated retroviral GAG gene in Drosophila: New functions for an old gene

(2014) L.N. Nefedova et al.   VIROLOGY

Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture

(2014) Noushin Ghaffari et al.   Scientific Reports

RNA-Seq analysis reveals genes associated with resistance to Taura syndrome virus (TSV) in the Pacific white shrimp Litopenaeus vannamei

(2013) Suchonma Sookruksawong et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Turning gold into ‘junk’: transposable elements utilize central proteins of cellular networks

(2013) György Abrusán et al.   NUCLEIC ACIDS RESEARCH

LTR-Retrotransposons in R. exoculata and Other Crustaceans: The Outstanding Success of GalEa-Like Copia Elements

(2013) Mathieu Piednoël et al.   PLoS One

Widespread horizontal transfer of retrotransposons

(2013) A. M. Walsh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hosts, parasites, and horizontal gene transfer

(2013) Bhagya K. Wijayawardena et al.   TRENDS IN PARASITOLOGY

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Lateral gene transfer

(2011) Olga Zhaxybayeva et al.   CURRENT BIOLOGY

The dynamic genome of Hydra

(2010) Jarrod A. Chapman et al.   NATURE

Assemblies: the good, the bad, the ugly

(2010) Ewan Birney   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

(2010) Etienne G. J. Danchin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Antiviral immunity in crustaceans

(2009) Haipeng Liu et al.   FISH & SHELLFISH IMMUNOLOGY

Phylogeny of penaeoid shrimps (Decapoda: Penaeoidea) inferred from nuclear protein-coding genes

(2009) K.Y. Ma et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Suppression of PmRab7 by dsRNA Inhibits WSSV or YHV Infection in Shrimp

(2008) Chalermporn Ongvarrasopone et al.   MARINE BIOTECHNOLOGY

The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records

(2008) K. J Peterson et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Lateral Transfer of a Lectin-Like Antifreeze Protein Gene in Fishes

(2008) Laurie A. Graham et al.   PLoS One

Massive Horizontal Gene Transfer in Bdelloid Rotifers

(2008) E. A. Gladyshev et al.   SCIENCE

Characterization of variable genomic regions of Indian white spot syndrome virus

(2008) Balakrishnan Pradeep et al.   VIROLOGY