Chemical Diversity and Classification of Secondary Metabolites in Nine Bryophyte Species

SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information

(2019) Kai Dührkop et al.   NATURE METHODS

Bryophytes as a source of bioactive volatile terpenoids – A review

(2019) Agnieszka Ludwiczuk et al.   FOOD AND CHEMICAL TOXICOLOGY

Current Challenges in Plant Eco-Metabolomics

(2018) Kristian Peters et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Seasonal variation of secondary metabolites in nine different bryophytes

(2018) Kristian Peters et al.   Ecology and Evolution

Computational workflow to study the seasonal variation of secondary metabolites in nine different bryophytes

(2018) Kristian Peters et al.   Scientific Data

Eco-Metabolomics and Metabolic Modeling: Making the Leap From Model Systems in the Lab to Native Populations in the Field

(2018) Matthias Nagler et al.   Frontiers in Plant Science

Bioinformatics can boost metabolomics research

(2017) René Meier et al.   JOURNAL OF BIOTECHNOLOGY

The evolution of hydrophobic cell wall biopolymers: from algae to angiosperms

(2017) Karl J Niklas et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of small molecules using accurate mass MS/MS search

(2017) Tobias Kind et al.   MASS SPECTROMETRY REVIEWS

Shotgun metagenomics, from sampling to analysis

(2017) Christopher Quince et al.   NATURE BIOTECHNOLOGY

Microbial Community and Biochemical Dynamics of Biological Soil Crusts across a Gradient of Surface Coverage in the Central Mojave Desert

(2017) Rakesh Mogul et al.   Frontiers in Microbiology

The interactive effects of temperature and moisture on nitrogen fixation in two temperate-arctic mosses

(2017) Kathrin Rousk et al.   Theoretical and Experimental Plant Physiology

Physiological and transcriptomic analyses reveal a response mechanism to cold stress in Santalum album L. leaves

(2017) Xinhua Zhang et al.   Scientific Reports

Discovering Regulated Metabolite Families in Untargeted Metabolomics Studies

(2016) Hendrik Treutler et al.   ANALYTICAL CHEMISTRY

Gastropods slow down succession and maintain diversity in cryptogam communities

(2016) Steffen Boch et al.   ECOLOGY

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

(2016) Mingxun Wang et al.   NATURE BIOTECHNOLOGY

Bryophytes – an emerging source for herbal remedies and chemical production

(2016) Marko S. Sabovljević et al.   Plant Genetic Resources-Characterization and Utilization

The Tomato Hoffman’s Anthocyaninless Gene Encodes a bHLH Transcription Factor Involved in Anthocyanin Biosynthesis That Is Developmentally Regulated and Induced by Low Temperatures

(2016) Zhengkun Qiu et al.   PLoS One

Topic modeling for untargeted substructure exploration in metabolomics

(2016) Justin Johan Jozias van der Hooft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mass spectral databases for LC/MS- and GC/MS-based metabolomics: State of the field and future prospects

(2016) Maria Vinaixa et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

The WEIZMASS spectral library for high-confidence metabolite identification

(2016) Nir Shahaf et al.   Nature Communications

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy

(2016) Yannick Djoumbou Feunang et al.   Journal of Cheminformatics

MetFrag relaunched: incorporating strategies beyond in silico fragmentation

(2016) Christoph Ruttkies et al.   Journal of Cheminformatics

Bryophytes – an emerging source for herbal remedies and chemical production

(2016) Marko S. Sabovljević et al.   Plant Genetic Resources-Characterization and Utilization

PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R

(2015) Jan Grau et al.   BIOINFORMATICS

Decreasing pH Results in a Reduction of Anthocyanin Coprecipitation during Cold Stabilization of Purple Grape Juice

(2015) David Manns et al.   MOLECULES

Chemical Composition Analysis, Antimicrobial Activity and Cytotoxicity Screening of Moss Extracts (Moss Phytochemistry)

(2015) Laura Klavina et al.   MOLECULES

ChEBI in 2016: Improved services and an expanding collection of metabolites

(2015) Janna Hastings et al.   NUCLEIC ACIDS RESEARCH

Searching molecular structure databases with tandem mass spectra using CSI:FingerID

(2015) Kai Dührkop et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Illuminating the dark matter in metabolomics: Fig. 1.

(2015) Ricardo R. da Silva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Precision-Recall Plot Is More Informative than the ROC Plot When Evaluating Binary Classifiers on Imbalanced Datasets

(2015) Takaya Saito et al.   PLoS One

Selection in monoculture vs. mixture alters plant metabolic fingerprints

(2014) Debra Zuppinger-Dingley et al.   Journal of Plant Ecology

Area under Precision-Recall Curves for Weighted and Unweighted Data

(2014) Jens Keilwagen et al.   PLoS One

Contribution of NAC Transcription Factors to Plant Adaptation to Land

(2014) B. Xu et al.   SCIENCE

Structural Characterization and Chemical Classification of Some Bryophytes Found in Latvia

(2013) Viktorija Maksimova et al.   CHEMISTRY & BIODIVERSITY

The Oil Bodies of Liverworts: Unique and Important Organelles in Land Plants

(2013) Xiaolan He et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Plant Flavonoids—Biosynthesis, Transport and Involvement in Stress Responses

(2013) Elisa Petrussa et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification of cryptic species within liverwort Conocephalum conicum based on the volatile components

(2013) Agnieszka Ludwiczuk et al.   PHYTOCHEMISTRY

KNApSAcK Metabolite Activity Database for Retrieving the Relationships Between Metabolites and Biological Activities

(2013) Y. Nakamura et al.   PLANT AND CELL PHYSIOLOGY

Plant Defense Against Herbivores: Chemical Aspects

(2012) Axel Mithöfer et al.   Annual Review of Plant Biology

Emissions of green leaf volatiles and terpenoids from Solanum lycopersicum are quantitatively related to the severity of cold and heat shock treatments

(2012) Lucian Copolovici et al.   JOURNAL OF PLANT PHYSIOLOGY

Antioxidant and Antimicrobial Activities of Cinnamic Acid Derivatives

(2012) M. Sova   MINI-REVIEWS IN MEDICINAL CHEMISTRY

MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data

(2012) Kenneth Haug et al.   NUCLEIC ACIDS RESEARCH

Phytochemical and biological studies of bryophytes

(2012) Yoshinori Asakawa et al.   PHYTOCHEMISTRY

Bryophyte diversity and evolution: Windows into the early evolution of land plants

(2011) A. Jonathan Shaw et al.   AMERICAN JOURNAL OF BOTANY

CAMERA: An Integrated Strategy for Compound Spectra Extraction and Annotation of Liquid Chromatography/Mass Spectrometry Data Sets

(2011) Carsten Kuhl et al.   ANALYTICAL CHEMISTRY

Flavonols: old compounds for old roles

(2011) Susanna Pollastri et al.   ANNALS OF BOTANY

Ecological metabolomics: overview of current developments and future challenges

(2011) Jordi Sardans et al.   CHEMOECOLOGY

Comparison of 16S rRNA and protein-coding genes as molecular markers for assessing microbial diversity (Bacteria and Archaea) in ecosystems

(2011) Simon Roux et al.   FEMS MICROBIOLOGY ECOLOGY

Sources of variation in plant responses to belowground insect herbivory: a meta-analysis

(2011) Elena L. Zvereva et al.   OECOLOGIA

Bryophytes display allelopathic interactions with tree species in native forest ecosystems

(2011) Pascale Michel et al.   OIKOS

Metabolite profiling of the moss Physcomitrella patens reveals evolutionary conservation of osmoprotective substances

(2011) Anika Erxleben et al.   PLANT CELL REPORTS

The Chemical Information Ontology: Provenance and Disambiguation for Chemical Data on the Biological Semantic Web

(2011) Janna Hastings et al.   PLoS One

Novel Acetylenic Oxylipins from the Moss Dicranum scoparium with Antifeeding Activity against Herbivorous Slugs

(2010) Martin Rempt et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

MassBank: a public repository for sharing mass spectral data for life sciences

(2010) Hisayuki Horai et al.   JOURNAL OF MASS SPECTROMETRY

Opinion on the possible role of flavonoids as energy escape valves: Novel tools for nature's Swiss army knife?

(2010) Iker Hernández et al.   PLANT SCIENCE

Secondary Metabolites in Bryophytes: An Ecological Aspect

(2009) Chun-Feng Xie et al.   CHEMISTRY & BIODIVERSITY

Between a Rock and a Dry Place: The Water-Stressed Moss

(2009) Audra J. Charron et al.   Molecular Plant

Effects of bryophytes and grass litter on seedling emergence vary by vertical seed position and seed size

(2009) Tobias W. Donath et al.   PLANT ECOLOGY

Computational strategies for metabolite identification in metabolomics

(2009) David S Wishart   Bioanalysis

Highly sensitive feature detection for high resolution LC/MS

(2008) Ralf Tautenhahn et al.   BMC BIOINFORMATICS