Extensive horizontal gene transfers between plant pathogenic fungi

Horizontal gene transfer: building the web of life

(2015) Shannon M. Soucy et al.   NATURE REVIEWS GENETICS

Genome-scale phylogenetic analysis finds extensive gene transfer among fungi

(2015) Gergely J. Szöllősi et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenomic analysis uncovers the evolutionary history of nutrition and infection mode in rice blast fungus and other Magnaporthales

(2015) Jing Luo et al.   Scientific Reports

Dimensions of Horizontal Gene Transfer in Eukaryotic Microbial Pathogens

(2015) Emile Gluck-Thaler et al.   PLoS Pathogens

Horizontal Gene Transfer in Eukaryotic Plant Pathogens

(2014) Darren Soanes et al.   Annual Review of Phytopathology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Evolution of Fungal Metabolic Pathways

(2014) Jennifer H. Wisecaver et al.   PLoS Genetics

Detecting rare gene transfer events in bacterial populations

(2014) Kaare M. Nielsen et al.   Frontiers in Microbiology

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring ancient divergences requires genes with strong phylogenetic signals

(2013) Leonidas Salichos et al.   NATURE

The Transporter Classification Database

(2013) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Genome of the red alga Porphyridium purpureum

(2013) Debashish Bhattacharya et al.   Nature Communications

Ancient Gene Paralogy May Mislead Inference of Plastid Phylogeny

(2012) Huan Qiu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Lateral gene transfer as a support for the tree of life

(2012) S. S. Abby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The function and evolution of the Aspergillus genome

(2012) John G. Gibbons et al.   TRENDS IN MICROBIOLOGY

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Genome Evolution: Horizontal Movements in the Fungi

(2011) Thomas A. Richards   CURRENT BIOLOGY

Horizontal gene transfer in fungi

(2011) David A. Fitzpatrick   FEMS MICROBIOLOGY LETTERS

A Consistent Phylogenetic Backbone for the Fungi

(2011) I. Ebersberger et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene transfer into the fungi

(2011) Thomas A. Richards et al.   Fungal Biology Reviews

CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database

(2010) Byung H Park et al.   GLYCOBIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

The network of life: genome beginnings and evolution

(2009) M. A. Ragan et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Acquisition of prokaryotic genes by fungal genomes

(2009) Marina Marcet-Houben et al.   TRENDS IN GENETICS

The global cysteine peptidase landscape in parasites

(2009) Holly J. Atkinson et al.   TRENDS IN PARASITOLOGY

More than 400 million years of evolution and some plants still can't make it on their own: plant stress tolerance via fungal symbiosis

(2008) R. Rodriguez et al.   JOURNAL OF EXPERIMENTAL BOTANY

Horizontal gene transfer in eukaryotic evolution

(2008) Patrick J. Keeling et al.   NATURE REVIEWS GENETICS

The MEROPS batch BLAST: A tool to detect peptidases and their non-peptidase homologues in a genome

(2007) Neil D. Rawlings et al.   BIOCHIMIE