MetaMIS: a metagenomic microbial interaction simulator based on microbial community profiles
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Title
MetaMIS: a metagenomic microbial interaction simulator based on microbial community profiles
Authors
Keywords
Metagenomics, Lotka-Volterra, Network dynamics
Journal
BMC BIOINFORMATICS
Volume 17, Issue 1, Pages -
Publisher
Springer Nature
Online
2016-11-25
DOI
10.1186/s12859-016-1359-0
References
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Note: Only part of the references are listed.- Inferring microbial interaction network from microbiome data using RMN algorithm
- (2015) Kun-Nan Tsai et al. BMC Systems Biology
- The ecology of the microbiome: Networks, competition, and stability
- (2015) K. Z. Coyte et al. SCIENCE
- Sparse and Compositionally Robust Inference of Microbial Ecological Networks
- (2015) Zachary D. Kurtz et al. PLoS Computational Biology
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- (2014) Husen Zhang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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- (2014) S. Nhamoyebonde et al. JOURNAL OF INFECTIOUS DISEASES
- Identifying Keystone Species in the Human Gut Microbiome from Metagenomic Timeseries Using Sparse Linear Regression
- (2014) Charles K. Fisher et al. PLoS One
- Deciphering microbial interactions and detecting keystone species with co-occurrence networks
- (2014) David Berry et al. Frontiers in Microbiology
- CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction
- (2014) Florent E Angly et al. Microbiome
- Gender Bias in Autoimmunity Is Influenced by Microbiota
- (2013) Leonid Yurkovetskiy et al. IMMUNITY
- Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules
- (2013) R. Levy et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mathematical modeling of primary succession of murine intestinal microbiota
- (2013) S. Marino et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A metagenome-wide association study of gut microbiota in type 2 diabetes
- (2012) Junjie Qin et al. NATURE
- Microbial interactions: from networks to models
- (2012) Karoline Faust et al. NATURE REVIEWS MICROBIOLOGY
- Inferring Correlation Networks from Genomic Survey Data
- (2012) Jonathan Friedman et al. PLoS Computational Biology
- The Earth Microbiome Project: Meeting report of the “1st EMP meeting on sample selection and acquisition” at Argonne National Laboratory October 6th 2010.
- (2011) Jack A. Gilbert et al. Standards in Genomic Sciences
- Moving pictures of the human microbiome
- (2011) J Gregory Caporaso et al. GENOME BIOLOGY
- Metagenomic analyses reveal antibiotic-induced temporal and spatial changes in intestinal microbiota with associated alterations in immune cell homeostasis
- (2009) D A Hill et al. Mucosal Immunology
- Sexual Inequality in Tuberculosis
- (2009) Olivier Neyrolles et al. PLOS MEDICINE
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