Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources

MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions

(2016) Carrine E. Blank et al.   Journal of Biomedical Semantics

A Comprehensive Study of Cyanobacterial Morphological and Ecological Evolutionary Dynamics through Deep Geologic Time

(2016) Josef C. Uyeda et al.   PLoS One

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology

(2014) Wasila M Dahdul et al.   Journal of Biomedical Semantics

Origin and early evolution of photosynthetic eukaryotes in freshwater environments: reinterpreting proterozoic paleobiology and biogeochemical processes in light of trait evolution

(2013) Carrine E. Blank   JOURNAL OF PHYCOLOGY

Evolutionary origins and diversification of proteobacterial mutualists

(2013) J. L. Sachs et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A text-mining system for extracting metabolic reactions from full-text articles

(2012) Jan Czarnecki et al.   BMC BIOINFORMATICS

Pharmacogenomics Knowledge for Personalized Medicine

(2012) M Whirl-Carrillo et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Isoelectric point optimization using peptide descriptors and support vector machines

(2012) Yasset Perez-Riverol et al.   Journal of Proteomics

CharaParser for fine-grained semantic annotation of organism morphological descriptions

(2012) Hong Cui   JOURNAL OF THE AMERICAN SOCIETY FOR INFORMATION SCIENCE AND TECHNOLOGY

Using Support Vector Machine to identify imaging biomarkers of neurological and psychiatric disease: A critical review

(2012) Graziella Orrù et al.   NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS

Low Rates of Lateral Gene Transfer among Metabolic Genes Define the Evolving Biogeochemical Niches of Archaea through Deep Time

(2012) Carrine E. Blank   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

Logical Development of the Cell Ontology

(2011) Terrence F Meehan et al.   BMC BIOINFORMATICS

Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits

(2011) John Larsson et al.   BMC EVOLUTIONARY BIOLOGY

Independent Origins of Vectored Plant Pathogenic Bacteria from Arthropod-Associated Arsenophonus Endosymbionts

(2011) Alberto Bressan et al.   MICROBIAL ECOLOGY

Disease Ontology: a backbone for disease semantic integration

(2011) L. M. Schriml et al.   NUCLEIC ACIDS RESEARCH

PathText: a text mining integrator for biological pathway visualizations

(2010) B. Kemper et al.   BIOINFORMATICS

Phenomics: the next challenge

(2010) David Houle et al.   NATURE REVIEWS GENETICS

Event extraction for systems biology by text mining the literature

(2010) Sophia Ananiadou et al.   TRENDS IN BIOTECHNOLOGY

Not so old Archaea - the antiquity of biogeochemical processes in the archaeal domain of life

(2009) CARRINE E. BLANK   Geobiology

Learning from Imbalanced Data

(2009) Haibo He et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Reclassification of Bacteroides ureolyticus as Campylobacter ureolyticus comb. nov., and emended description of the genus Campylobacter

(2009) P. Vandamme et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Evaluating contributions of natural language parsers to protein-protein interaction extraction

(2008) Y. Miyao et al.   BIOINFORMATICS

Gene regulatory network inference: Data integration in dynamic models—A review

(2008) Michael Hecker et al.   BIOSYSTEMS

Open information extraction from the web

(2008) Oren Etzioni et al.   COMMUNICATIONS OF THE ACM