Low Rates of Lateral Gene Transfer among Metabolic Genes Define the Evolving Biogeochemical Niches of Archaea through Deep Time

Lateral gene transfer as a support for the tree of life

(2012) S. S. Abby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Terminal Oxidase Diversity and Function in “Metallosphaera yellowstonensis”: Gene Expression and Protein Modeling Suggest Mechanisms of Fe(II) Oxidation in theSulfolobales

(2011) M. A. Kozubal et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The superfamily of heme–copper oxygen reductases: Types and evolutionary considerations

(2011) Filipa L. Sousa et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes

(2011) O. Popa et al.   GENOME RESEARCH

An Expansion of Age Constraints for Microbial Clades that Lack a Conventional Fossil Record Using Phylogenomic Dating

(2011) Carrine E. Blank   JOURNAL OF MOLECULAR EVOLUTION

The Impact of rRNA Secondary Structure Consideration in Alignment and Tree Reconstruction: Simulated Data and a Case Study on the Phylogeny of Hexapods

(2010) Harald O. Letsch et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomic Dating—A Method of Constraining the Age of Microbial Taxa That Lack a Conventional Fossil Record

(2009) Carrine E. Blank   ASTROBIOLOGY

Phylogenomic Dating—The Relative Antiquity of Archaeal Metabolic and Physiological Traits

(2009) Carrine E. Blank   ASTROBIOLOGY

Evolutionary constraints permeate large metabolic networks

(2009) Andreas Wagner   BMC EVOLUTIONARY BIOLOGY

Site-directed mutagenesis reveals new and essential elements for iron-coordination of the sulfur oxygenase reductase from the acidothermophilic Acidianus tengchongensis

(2009) ZhiWei Chen et al.   CHINESE SCIENCE BULLETIN

A molecular and physiological survey of a diverse collection of hydrothermal vent Thermococcus and Pyrococcus isolates

(2009) Andreas Teske et al.   EXTREMOPHILES

Not so old Archaea - the antiquity of biogeochemical processes in the archaeal domain of life

(2009) CARRINE E. BLANK   Geobiology

Phylogeny of prokaryotes: does it exist and why should we care?

(2009) Simonetta Gribaldo et al.   RESEARCH IN MICROBIOLOGY

Metabolism of halophilic archaea

(2008) Michaela Falb et al.   EXTREMOPHILES

The Multiple Evolutionary Histories of Dioxygen Reductases: Implications for the Origin and Evolution of Aerobic Respiration

(2008) C. Brochier-Armanet et al.   MOLECULAR BIOLOGY AND EVOLUTION

Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution

(2008) T. Dagan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA