Sequencing and analyses on chloroplast genomes of Tetrataenium candicans and two allies give new insights on structural variants, DNA barcoding and phylogeny in Apiaceae subfamily Apioideae

Characterization of the complete chloroplast genomes of five Populus species from the western Sichuan plateau, southwest China: comparative and phylogenetic analyses

(2019) Dan Zong et al.   PeerJ

Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

(2018) Luxian Liu et al.   BMC GENOMICS

Complete chloroplast genome sequences of Dioscorea: Characterization, genomic resources, and phylogenetic analyses

(2018) Zhenyu Zhao et al.   PeerJ

DNA barcoding for biosecurity: case studies from the UK plant protection program

(2016) Jennifer Hodgetts et al.   GENOME

Detection and characterisation of the biopollutant Xenostrobus securis (Lamarck 1819) Asturian population from DNA Barcoding and eBarcoding

(2016) Floriaan Devloo-Delva et al.   MARINE POLLUTION BULLETIN

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The BIG Data Center: from deposition to integration to translation

(2016)   NUCLEIC ACIDS RESEARCH

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

(2016) Todd M. Lowe et al.   NUCLEIC ACIDS RESEARCH

Phylogeographical structure inferred from cpDNA sequence variation of Zygophyllum xanthoxylon across north-west China

(2015) Xiao-Jun Shi et al.   JOURNAL OF PLANT RESEARCH

Intergeneric hybridisation between Berula erecta and Helosciadium nodiflorum (Apiaceae)

(2015) Stuart D. Desjardins et al.   TAXON

Genome skimming for next-generation biodiversity analysis

(2015) Steven Dodsworth   TRENDS IN PLANT SCIENCE

Predominant and Substoichiometric Isomers of the Plastid Genome Coexist within Juniperus Plants and Have Shifted Multiple Times during Cupressophyte Evolution

(2014) Wenhu Guo et al.   Genome Biology and Evolution

Possible Loss of the Chloroplast Genome in the Parasitic Flowering Plant Rafflesia lagascae (Rafflesiaceae)

(2014) Jeanmaire Molina et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification of species in the angiosperm family Apiaceae using DNA barcodes

(2014) Jinxin Liu et al.   Molecular Ecology Resources

Elevation-induced climate change as a dominant factor causing the late Miocene C4plant expansion in the Himalayan foreland

(2013) Haibin Wu et al.   GLOBAL CHANGE BIOLOGY

Dispersal patterns in space and time: a case study of Apiaceae subfamily Apioideae

(2013) Łukasz Banasiak et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeographic analysis of a temperate-deciduous forest restricted plant (Bupleurum longiradiatum Turcz.) reveals two refuge areas in China with subsequent refugial isolation promoting speciation

(2013) Cai Zhao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Complex evolution in Arundinarieae (Poaceae: Bambusoideae): Incongruence between plastid and nuclear GBSSI gene phylogenies

(2012) Yu-Xiao Zhang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Estimating divergence times in large molecular phylogenies

(2012) K. Tamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Historical biogeography of the Angelica group (Apiaceae tribe Selineae) inferred from analyses of nrDNA and cpDNA sequences

(2012) Chen-Yang LIAO et al.   Journal of Systematics and Evolution

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Phylogeny and biogeography of Chinese Heracleum (Apiaceae tribe Tordylieae) with comments on their fruit morphology

(2011) Yan Yu et al.   PLANT SYSTEMATICS AND EVOLUTION

A comparison of nrDNA ITS and ETS loci for phylogenetic inference in the Umbelliferae: An example from tribe Tordylieae

(2010) Maria D. Logacheva et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Towards a more robust molecular phylogeny of Chinese Apiaceae subfamily Apioideae: Additional evidence from nrDNA ITS and cpDNA intron (rpl16 and rps16) sequences

(2009) Jing Zhou et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions

(2008) Zhengqiu Cai et al.   JOURNAL OF MOLECULAR EVOLUTION

Chlamydomonas chloroplasts can use short dispersed repeats and multiple pathways to repair a double-strand break in the genome

(2008) Obed W. Odom et al.   PLANT JOURNAL

The evolutionary history of Eryngium (Apiaceae, Saniculoideae): Rapid radiations, long distance dispersals, and hybridizations

(2007) Carolina I. Calviño et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION